PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590971.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 570aa    MW: 64149.9 Da    PI: 4.9345
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.6e-30272329259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +D y+WrKYGqK vkg+++prsYY+C+++gC+vkk+ver+a+d +++ +tY g+H h 
  XP_013590971.1 272 NDDYRWRKYGQKIVKGNPNPRSYYKCSHKGCNVKKHVERAADDLRMLLVTYYGKHGHA 329
                     7******************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-31257331IPR003657WRKY domain
PROSITE profilePS5081132.156266331IPR003657WRKY domain
SuperFamilySSF1182909.29E-27266331IPR003657WRKY domain
SMARTSM007744.7E-34271330IPR003657WRKY domain
PfamPF031062.7E-24272328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MSDYGDGNFM DMVSSNWAPP PSTSLSDNGL NPISDIFLQT NQSKQRPGLV DRVAARIGRN  60
IPPIRTDNLS PFAVSKNPKT VPFGIEISPG LSSSVMLQST SHLINPYSFP NDEPPETVEN  120
SGDDHAKTMI FNNDVPYQPM HFDLPPQEDS NVIPALIPSH ESHVDPIGVP LVASFESEVA  180
DDTDTIKLMS LDDESESQDE EESNEDEDTD DPSKLGRKRR IDEEEDDDIA DEHEVKPSSP  240
KRRKYDEVSN MMTALRTSNV MLRMETEEDQ PNDDYRWRKY GQKIVKGNPN PRSYYKCSHK  300
GCNVKKHVER AADDLRMLLV TYYGKHGHAA PLTRSSSSSG PKNLSRSSVP ARLGRPPFSS  360
SSAAQDMRPF PYPSASAPRD MRRFGYPSAL APQAMRPFPS SLNPGVDMTH LYKTGLPKLP  420
RLPVNQNHGF MGQNAEPWVN QNHEFMGQNA EPWVKQNHGF MGQNDEPWVN QNHGFMGQND  480
EAWVNQNHGF MGQNDEAWVN QNHGFMGQND EPWLNQNHGF MGQNDEPWVN QNHVFMGQND  540
EPKTDHVIPD GTEVYKGLME RMLANLGLKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22262331877Probable WRKY transcription factor 4
2lex_A2e-22262331877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590971.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590971.10.0PREDICTED: probable WRKY transcription factor 10
TrEMBLA0A0D3CR230.0A0A0D3CR23_BRAOL; Uncharacterized protein
STRINGBo6g034690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2037656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.11e-42WRKY DNA-binding protein 10