PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013590904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 354aa MW: 40233.9 Da PI: 5.8637 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.1 | 3.2e-38 | 85 | 235 | 2 | 128 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec.eaesssssasns 85 a+kkdrhskihT++g+R RRvRls+ + ++fFdLqd+LGfdk+skt++WLl+++ +aikel++ +++ + + e++ XP_013590904.1 85 AVKKDRHSKIHTAQGLRERRVRLSIGISRQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEkklnnnvedfGNEGGNVVhEED--------- 170 89**************************************************************4443333322111112222111......... PP TCP 86 ssg.......................kaaksaakskksqksaasalnlak.esrakarararertre 128 + ++ + k+ +++k++++++n + sraka+ +a+ tr+ XP_013590904.1 171 --DydydddnvgdnnfvyglspysfeEEVLCEVKKAEKRKKKTEMSNTSSkGSRAKAKGKAKGLTRD 235 ..12233444556788999999999744444445555555555666665559999999999887775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-36 | 86 | 234 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.939 | 87 | 145 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MSSSNNGYNN GSNNGVFPLS LYLSSLSGHQ DIICNPYNHQ LTASPGQMVS AVPESLMDYM 60 AFNSNNVMNQ QGFEIPEVSR EMKKAVKKDR HSKIHTAQGL RERRVRLSIG ISRQFFDLQD 120 MLGFDKASKT LDWLLKKSRR AIKELVQEKK LNNNVEDFGN EGGNVVHEED DYDYDDDNVG 180 DNNFVYGLSP YSFEEEVLCE VKKAEKRKKK TEMSNTSSKG SRAKAKGKAK GLTRDMINDH 240 PETASEIIQT EIMDPFKRSI IFNEGEEMTH SFYKESIQES DNHECITKTK VNLPMNMDQG 300 YNQHYGALML KDQGSSSNYN AILPQNLDCD YNPNPFIDQL FCGVTNTNFF RGFP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-14 | 92 | 145 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-14 | 92 | 145 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}. | |||||
Uniprot | TISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in petal morphogenesis. {ECO:0000269|PubMed:17940055}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013590904.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590902.1 | 0.0 | PREDICTED: transcription factor TCP1-like | ||||
Refseq | XP_013590903.1 | 0.0 | PREDICTED: transcription factor TCP1-like | ||||
Refseq | XP_013590904.1 | 0.0 | PREDICTED: transcription factor TCP1-like | ||||
Refseq | XP_013722428.1 | 0.0 | transcription factor TCP1-like | ||||
Swissprot | Q9FYG7 | 1e-157 | TCP1_ARATH; Transcription factor TCP1 | ||||
TrEMBL | A0A0D3CY48 | 0.0 | A0A0D3CY48_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g099040.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-139 | TCP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|