PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590891.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28492.4 Da PI: 5.8078 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.6 | 7e-23 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+ ++nrq+t+skR++g++KKA+ELS+LCd++ a+++fs++++l +ss XP_013590891.1 9 KPIQKSTNRQITYSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCIFSS 59 6899*****************************************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.371 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.7E-29 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-26 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-21 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-21 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-21 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-21 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRAKLEIKP IQKSTNRQIT YSKRKKGLIK KAYELSTLCD IDLALLMFSP SDRLCIFSSE 60 TRIEDVLAKY INLPDQEREN AIVFPDRSKR QGIQNKEYLL RTLEQLKTEN DMAFQINEPR 120 YEAIHSDVKE LEKELCRLQQ QLQISEEELR KFEPDPVRFT SMEEMEACEN HLLSTLTRMV 180 QRREHLLSRS FEAPSTQQSI ENIEGWEPEA EFKQARIIAN SAYASNHYDL PLQGIISNPT 240 QTPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 4e-18 | 1 | 91 | 1 | 92 | MEF2 CHIMERA |
6bz1_B | 4e-18 | 1 | 91 | 1 | 92 | MEF2 CHIMERA |
6bz1_C | 4e-18 | 1 | 91 | 1 | 92 | MEF2 CHIMERA |
6bz1_D | 4e-18 | 1 | 91 | 1 | 92 | MEF2 CHIMERA |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590891.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590891.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER D isoform X2 | ||||
Refseq | XP_013652475.1 | 0.0 | agamous-like MADS-box protein AGL104 isoform X2 | ||||
Swissprot | Q9LM46 | 6e-95 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A0D3D1G6 | 1e-179 | A0A0D3D1G6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GWU6 | 1e-179 | A0A3P6GWU6_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g121610.1 | 1e-180 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77950.2 | 1e-122 | AGAMOUS-like 67 |
Publications ? help Back to Top | |||
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