PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590823.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 95aa    MW: 10991.4 Da    PI: 10.1012
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-07952344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    + + +a + + ++   +W+ +a+ +g g++++++k ++
   XP_013590823.1  9 SWTFKQNKMFERALAVYDKDtpdRWHNVAKAVG-GKSAEEVKRHY 52
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.33256IPR017877Myb-like domain
SMARTSM007175.1E-7658IPR001005SANT/Myb domain
SuperFamilySSF466898.16E-13863IPR009057Homeodomain-like
PfamPF002491.6E-5952IPR001005SANT/Myb domain
CDDcd001672.42E-6952No hitNo description
Gene3DG3DSA:1.10.10.607.1E-4957IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASNSRSSSW TFKQNKMFER ALAVYDKDTP DRWHNVAKAV GGKSAEEVKR HYDILVEDLI  60
NIETGRVPLP NYKTFESNSR GINDFNTRLM KNLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-31195192RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590823.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894931e-141AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106182.15e-66PREDICTED: protein RADIALIS-like 6
RefseqXP_013590823.15e-66PREDICTED: protein RADIALIS-like 6
RefseqXP_013652446.15e-66protein RADIALIS-like 6
RefseqXP_013700871.15e-66protein RADIALIS-like 6
SwissprotQ1A1736e-60RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A397YRT91e-64A0A397YRT9_BRACM; Uncharacterized protein
STRINGBo6g119390.11e-60(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-62RAD-like 6