PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590784.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 748aa    MW: 83558.2 Da    PI: 7.0289
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.2e-2196151156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  XP_013590784.1  96 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 151
                     7999************************************************9877 PP
2START227.83.1e-712584871206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     e+a++a+ e++k+a+++ep+W +s     e++n+de+l++f+++++      +++ea+r++g+v+m++++l ++++d+  qW+e++a    ka t
  XP_013590784.1 258 EIANRATLEVLKMATSGEPLWLRSLetgrEILNYDEYLKEFPQAQAssfhgrKTIEASRDVGIVFMDAHKLAQSFMDVE-QWKEMFAclisKAVT 351
                     578999*************************************999*********************************.*************** PP

                     EEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEE CS
           START  82 levissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvt 165
                     ++vi++g       ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++wvivdvSv++e+++++   + s+ R++++pSg++ie++snghskvt
  XP_013590784.1 352 VDVIRQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPEKWVIVDVSVSVEEDNNStekEGSLLRCRKRPSGCIIEDTSNGHSKVT 446
                     ************************************************************999988878899*********************** PP

                     EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     wveh dl++++++ l+rs+v++gla+ga++wvatlq +ce+
  XP_013590784.1 447 WVEHLDLSASTVQPLFRSFVNTGLAFGARHWVATLQLHCER 487
                     ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2282147IPR009057Homeodomain-like
SuperFamilySSF466898.36E-2088154IPR009057Homeodomain-like
PROSITE profilePS5007117.81593153IPR001356Homeobox domain
SMARTSM003899.6E-1895157IPR001356Homeobox domain
PfamPF000462.7E-1896151IPR001356Homeobox domain
CDDcd000864.38E-16100151No hitNo description
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PROSITE profilePS5084844.402249490IPR002913START domain
SuperFamilySSF559612.2E-32252487No hitNo description
CDDcd088758.61E-108253486No hitNo description
PfamPF018523.6E-64258487IPR002913START domain
SMARTSM002341.0E-80258487IPR002913START domain
Gene3DG3DSA:3.30.530.206.0E-8312486IPR023393START-like domain
SuperFamilySSF559614.49E-16516734No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MSMAVEMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVA DDEDRTVEMS  60
SENSGPTRSR SEDNLEGEED QEEEDGAGNK GNKRKRKKYH RHTTDQIRHM EALFKETPHP  120
DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI KAIQERHENS LLKAELEKLR EENKTMRESF  180
SKANSSSCPN CGGGGGGSPD DLHLENTKLK AELDKLRAAL GRTPYPLQAS CSDDQHRRVG  240
SLELYTGVFA LEKSRIVEIA NRATLEVLKM ATSGEPLWLR SLETGREILN YDEYLKEFPQ  300
AQASSFHGRK TIEASRDVGI VFMDAHKLAQ SFMDVEQWKE MFACLISKAV TVDVIRQGEG  360
PSRIDGAIQL MFGEMQLLTP VVPTREVYFV RSCRQLSPEK WVIVDVSVSV EEDNNSTEKE  420
GSLLRCRKRP SGCIIEDTSN GHSKVTWVEH LDLSASTVQP LFRSFVNTGL AFGARHWVAT  480
LQLHCERLVF FMATNVPTKD SLGVTTLAGR KSVLKMAQRM TQSFYRAIAA SSYHQWNKIT  540
TKTGQDMRVS SRKNLHDPGE PTGVIVCASS SLWLPVSPTL LFDFFRDETR RHEWDALSNG  600
AHVQSIVSLS KGQDRGNSVS IQTVKSREKS TWVLQDSCTN SYESVVVYAP VDINTTQLVI  660
AGHDPSNIQI LPCGFSIIPD GVESRQLVIS SAQEDKNTQG GSLLTLALQT LVNQSPAAKL  720
NMESVESVTN LVSVTLHNIK RSLQIEDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397RKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590784.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1882100.0KF188210.1 Brassica villosa BVGL2 (BVGL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590784.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0D3CVI30.0A0A0D3CVI3_BRAOL; Uncharacterized protein
STRINGBo6g079990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]