PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590774.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 274aa    MW: 31508.4 Da    PI: 5.076
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590774.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.49.8e-111233355
         G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                    +++m+++gLtl+h+kSHLQkYRl
  XP_013590774.1  1 MKAMEIPGLTLYHLKSHLQKYRL 23
                    799*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-9123IPR009057Homeodomain-like
PfamPF143791.4E-1771118IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MKAMEIPGLT LYHLKSHLQK YRLGKSLKFD DNRLEVSSAL ETQEAESGNY SRDFKGSVNE  60
ENNHPANESL KITESLQLQT EVQKKLHEHI EIVQRNLQVK IEAQGKYLQS VLIKAQQTLA  120
GYTSSTLGMD FARTELSRFA SLVNPSSSFS ELTQVEEYEE EAEDAQESFL YRKKTETRGI  180
RLLRCSVESS LASSERSETK LNNDNDEKQL VELPLMEIKS EVMTDKKKRN HNDVVCMECQ  240
LLKKIDFEVD DDEQELKLSL NSYKKKYGDV PDRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590774.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590772.10.0PREDICTED: uncharacterized protein LOC106299191 isoform X1
RefseqXP_013590774.10.0PREDICTED: uncharacterized protein LOC106299191 isoform X3
SwissprotF4I2741e-111PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A0D3CXN00.0A0A0D3CXN0_BRAOL; Uncharacterized protein
STRINGBo6g095380.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-101G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]