PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590772.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 333aa    MW: 38028.9 Da    PI: 6.3306
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1031.9e-322982255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    prl+Wt+eLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl
  XP_013590772.1 29 PRLKWTCELHHRFVEAVNQLGGPNKATPKSLMKAMEIPGLTLYHLKSHLQKYRL 82
                    9****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-282682IPR009057Homeodomain-like
SuperFamilySSF466892.51E-152782IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-222883IPR006447Myb domain, plants
PfamPF002496.7E-73081IPR001005SANT/Myb domain
PfamPF143791.9E-17130177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MCLLMASNTN KGNNQKTKMS LVLSTDANPR LKWTCELHHR FVEAVNQLGG PNKATPKSLM  60
KAMEIPGLTL YHLKSHLQKY RLGKSLKFDD NRLEVSSALE TQEAESGNYS RDFKGSVNEE  120
NNHPANESLK ITESLQLQTE VQKKLHEHIE IVQRNLQVKI EAQGKYLQSV LIKAQQTLAG  180
YTSSTLGMDF ARTELSRFAS LVNPSSSFSE LTQVEEYEEE AEDAQESFLY RKKTETRGIR  240
LLRCSVESSL ASSERSETKL NNDNDEKQLV ELPLMEIKSE VMTDKKKRNH NDVVCMECQL  300
LKKIDFEVDD DEQELKLSLN SYKKKYGDVP DRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-183084458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590772.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590772.10.0PREDICTED: uncharacterized protein LOC106299191 isoform X1
SwissprotF4I2741e-145PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A0D3CXN00.0A0A0D3CXN0_BRAOL; Uncharacterized protein
STRINGBo6g095380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-135G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]