PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590771.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 285aa    MW: 32407.2 Da    PI: 8.2253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001527123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC  C ksF +   L  H+r+H
  XP_013590771.1  5 YKCRFCFKSFFNGRALGGHMRSH 27
                    9********************99 PP
2zf-C2H215.55.1e-05177199123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cgk+F++   L  H  +H
  XP_013590771.1 177 FTCETCGKVFKSYQALGGHRASH 199
                     89***********9999998887 PP
3zf-C2H210.70.0017222244123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F +   L  H r+H
  XP_013590771.1 222 HECPICLRVFASGQALGGHKRSH 244
                     79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.3E-4429IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-9427No hitNo description
SMARTSM003550.044527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.889527IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-9172199No hitNo description
PROSITE profilePS5015711.053177204IPR007087Zinc finger, C2H2
PfamPF139124.5E-11177201IPR007087Zinc finger, C2H2
SMARTSM003550.02177199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
PfamPF139124.8E-12222244IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058222244IPR007087Zinc finger, C2H2
SMARTSM003550.23222244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MESYYKCRFC FKSFFNGRAL GGHMRSHMPS LHKFSIQEEE GERASQVNDE TESDVSSSSM  60
MDDDDPKVAN ESETESSRNI TNPTRKRSKR TRKLETFATK KTKASQLGYK TEPECEPPHS  120
SASDTTTDED LAFCLMLLSR DKWMKKKNKA SRNKEVVEEI ETEASEGYTK SSKKGRFTCE  180
TCGKVFKSYQ ALGGHRASHK KNRVSNKTEQ RSETEYPERI IHECPICLRV FASGQALGGH  240
KRSHGIGNLS VDHHHQVRVE SVKQRMIDLN LPAPTDEEEV SVVFQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590771.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590771.10.0PREDICTED: zinc finger protein ZAT9-like
SwissprotQ9M2021e-126ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A0D3CV020.0A0A0D3CV02_BRAOL; Uncharacterized protein
STRINGBo6g077190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-122C2H2-like zinc finger protein