PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 353aa MW: 39438.2 Da PI: 6.5889 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.1 | 3e-31 | 195 | 249 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rW+peLH++F+eav++L G+ekAtPk+++++m+v+gLt+++vkSHLQkYR+ XP_013590547.1 195 KPRMRWSPELHDCFLEAVKKLDGPEKATPKAVMKMMSVEGLTIYQVKSHLQKYRI 249 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.904 | 192 | 252 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-29 | 193 | 250 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-17 | 194 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-25 | 195 | 250 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-9 | 197 | 248 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.3E-21 | 287 | 333 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MNSHSLWSID GGNTPCSSSS LSPLHNFLNL HPTETTTTSF QFKPSRHFSN GSFSRSSAFC 60 NLSSSSSSDT QKHLGTTLPF LSNPSTERSP AAASFSEEDL LSIPYEEEVD TSFLSLHGDG 120 GLQDLDKFSL SEEQMALQFL SDELQLAITD RAQTPRLDEI YQVTGSSPGQ KCIPSAMPVL 180 SQQPSPGGTE AVNQKPRMRW SPELHDCFLE AVKKLDGPEK ATPKAVMKMM SVEGLTIYQV 240 KSHLQKYRIA KHMPERKEEK KSGGNPEEKK PASNTNGEAN GRKKGAIQLT EALRMQMEVQ 300 KQLHQQLEVQ RSLQLRIEEH AKYLEKILDE QRKSTSKQDD ECETSLKRPR LEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-21 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-21 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-21 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-21 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-21 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-21 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-21 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-21 | 195 | 252 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590547.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590547.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | Q949U2 | 1e-109 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A0D3CR46 | 0.0 | A0A0D3CR46_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g035910.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19136 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-105 | G2-like family protein |
Publications ? help Back to Top | |||
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