PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 351aa MW: 40052.6 Da PI: 5.2237 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.2 | 7.2e-39 | 83 | 232 | 1 | 129 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec........eaesssssa 82 +a+kkdrhski T +g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aikel++ + + e ++ ++ XP_013590529.1 83 QAVKKDRHSKIQTGQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQGkkvntD--ED--FaniggeveE---EEDEE 170 589************************************************************99765331..22..2234432221...11111 PP TCP 83 snsssg................kaaksaakskksqksaasalnlak.esrakarararertrek 129 +++ + +++ + k+ +++k++ + +n++ srakar +a+e tre XP_013590529.1 171 DEE--DdgdksfvygsspdsleEEMVCEVKKAQKRKKKIELRNISSkGSRAKARGKAKEITRET 232 111..1234466778888888777888888888888888888888779***********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-38 | 85 | 233 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.908 | 86 | 144 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MSSSNNDYNN GNNGVYPFSL YLSPLAGRQD IIRNPYNHQP TPSPGQMVSA VPESLINYMS 60 FSSNRAVNQQ GFEIPEVSRE IKQAVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM 120 LGFDKASKTL DWLLKKSRRA IKELVQGKKV NTDEDFANIG GEVEEEEDEE DEEDDGDKSF 180 VYGSSPDSLE EEMVCEVKKA QKRKKKIELR NISSKGSRAK ARGKAKEITR ETTYDHPETI 240 SEITQTEIMD PLKRSIIFNE GEDMTHSLCK EATQEFDSQE CTLSKTKVNL PTNMDQSYNQ 300 HYGTFMLKDQ GSSSNYNNIL PQNLDFYYDQ NPFIDQPFCA VTKTNFPRGF P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-13 | 91 | 144 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 6e-13 | 91 | 144 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 202 | VKKAQKR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}. | |||||
Uniprot | TISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in petal morphogenesis. {ECO:0000269|PubMed:17940055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590529.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590528.1 | 0.0 | PREDICTED: transcription factor TCP1-like | ||||
Refseq | XP_013590529.1 | 0.0 | PREDICTED: transcription factor TCP1-like | ||||
Swissprot | Q9FYG7 | 1e-161 | TCP1_ARATH; Transcription factor TCP1 | ||||
TrEMBL | A0A0D3CYL4 | 0.0 | A0A0D3CYL4_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g103670.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-147 | TCP family protein |
Publications ? help Back to Top | |||
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