PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590514.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 24867.5 Da PI: 9.6513 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1e-18 | 71 | 125 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++ keq ++Lee F +n++++ ++++eLA l+L++rqV vWFqNrRa+ k XP_013590514.1 71 RKKLRLIKEQSHILEESFIQNNTLTPKQKQELAILLKLSQRQVEVWFQNRRARSK 125 66677789*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 104.9 | 6.2e-34 | 71 | 159 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl keq+++LEesF ++++L+p++K+ela L+l++rqv+vWFqnrRAR k+k+ E+++e+Lkr++++lke+n+rL+ eveeLr + XP_013590514.1 71 RKKLRLIKEQSHILEESFIQNNTLTPKQKQELAILLKLSQRQVEVWFQNRRARSKLKHREMECEYLKRWFESLKEQNRRLQIEVEELR-A 159 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-18 | 56 | 127 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-17 | 61 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.892 | 67 | 127 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-17 | 69 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.15E-14 | 70 | 128 | No hit | No description |
Pfam | PF00046 | 4.7E-16 | 71 | 125 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 6.8E-14 | 127 | 170 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.6E-8 | 130 | 161 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAVSPNSSSL ELTISIQSFS PSPSHPLSGD HMVRDLGINQ TPKKEEDRGW IMIGTTPHIN 60 EEDENLGGRP RKKLRLIKEQ SHILEESFIQ NNTLTPKQKQ ELAILLKLSQ RQVEVWFQNR 120 RARSKLKHRE MECEYLKRWF ESLKEQNRRL QIEVEELRAL KPVLASVLSM CPLCERVTNA 180 ADNDLKKKQI MTNAVEEATA RRSQSRMAFS SSSSLC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 74 | RPRKKLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590514.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590514.1 | 1e-158 | PREDICTED: homeobox-leucine zipper protein ATHB-X-like | ||||
Refseq | XP_013741169.1 | 1e-158 | homeobox-leucine zipper protein ATHB-X-like | ||||
Swissprot | Q8GXM7 | 4e-93 | ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X | ||||
TrEMBL | A0A3P6H440 | 1e-157 | A0A3P6H440_BRAOL; Uncharacterized protein | ||||
STRING | Bra016174.1-P | 1e-106 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13380 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70920.1 | 5e-95 | homeobox-leucine zipper protein 18 |
Publications ? help Back to Top | |||
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