PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 370aa MW: 41768.5 Da PI: 6.5573 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.3e-18 | 58 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +v+ +G g W+t + + g++R++k+c++rw +yl XP_013590461.1 58 KGAWTQEEDQKLIAYVQHHGEGGWRTLPDKAGLKRCGKSCRLRWANYL 105 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.9 | 2.3e-18 | 111 | 155 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE++ ++++++ +G++ W++Iar+++ gRt++++k++w+++ XP_013590461.1 111 RGEFSQEEEDSIINLHAIHGNK-WSAIARRLP-GRTDNEIKNHWNTH 155 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 49 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.783 | 53 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-30 | 55 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-13 | 57 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 58 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.58E-10 | 60 | 105 | No hit | No description |
PROSITE profile | PS51294 | 26.611 | 106 | 160 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 109 | 161 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-17 | 110 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 111 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-12 | 113 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009625 | Biological Process | response to insect | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MFSSKDHVLS FFDLSPDHNK KSLFFLLSLF FSFSSFYCNN QKSRMVRTPC CRAEGLKKGA 60 WTQEEDQKLI AYVQHHGEGG WRTLPDKAGL KRCGKSCRLR WANYLRPDIK RGEFSQEEED 120 SIINLHAIHG NKWSAIARRL PGRTDNEIKN HWNTHIKKRL IKKGIDPLTH KSLDHSETLP 180 DKSIGHQEDD DQKSNNKKSL GPSSARFLNR VANIFGKRLD HSALSDIIGS GGPFTTHTTP 240 TTSASECEKS TSSLSTPNSS NLHMIHDATS LSSSTFSNDT SAQLVYDNIF DDVEDMTGFS 300 SRFLNDIVSH DDEDLLMLDE SSSDNTLFMK ELTMILKGDK TETMSFNDSH LAAINVVDDY 360 SFEGIDNWFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 56 | 160 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes. {ECO:0000269|PubMed:23115560}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590461.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189400 | 0.0 | AC189400.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056L15, complete sequence. | |||
GenBank | FJ584300 | 0.0 | FJ584300.1 Brassica rapa subsp. pekinensis MYB domain protein 122 pseudogene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590461.1 | 0.0 | PREDICTED: transcription factor MYB122-like | ||||
Swissprot | Q9C9C8 | 1e-152 | MY122_ARATH; Transcription factor MYB122 | ||||
TrEMBL | A0A0D3D0J0 | 0.0 | A0A0D3D0J0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GYV3 | 0.0 | A0A3P6GYV3_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g118350.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74080.1 | 1e-137 | myb domain protein 122 |