PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590425.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 322aa MW: 35725 Da PI: 9.6864 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 101.4 | 8.4e-32 | 162 | 217 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 e ++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF XP_013590425.1 162 ESVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 217 789**************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.6E-37 | 159 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.759 | 160 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.5E-26 | 163 | 217 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.4E-23 | 163 | 185 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 165 | 185 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 8.4E-23 | 194 | 217 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MSKKGSTLPY LNTSISWGGM ISTEPLSLKV VDARPEHMHA TKQISFQDQD SPSTQSTCQS 60 YTEVASSGDD EPCRQISFST KSGSEETQRK VSATHTKPCA VTSFPNMHFA PVQTNFSFHY 120 ADPHYGGLLA TPYLPHAPTC NPQMVGMVPG RVALPVEITE TESVFVNAKQ YHAIMRRRQQ 180 RAKLEAQNKL IKARKPYLHE SRHVHALKRP RGSGGRFLNT KKLLQESQQA AAKEQERDKS 240 VQQANMSRFK AHHMLQHNKD RGSTTSGSDI TSVSDGAADI FGHTEFQFSG FPTTQTNRAM 300 LVHGQSNDMH GGGDLHHFSV HI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-19 | 162 | 221 | 3 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590425.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590425.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3-like | ||||
Swissprot | Q93ZH2 | 1e-178 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A0D3D079 | 0.0 | A0A0D3D079_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g116250.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3349 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 1e-167 | nuclear factor Y, subunit A3 |