PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590289.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 287aa    MW: 32129.8 Da    PI: 4.8932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590289.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-18103153256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrd s+   r+r++lg+f taeeAa a+++a+ +l+g+
  XP_013590289.1 103 KYRGVRQRR-WGSFAAEIRDSST---RTRIWLGTFATAEEAAVAYDRAAIRLKGH 153
                     8*****998.**********543...5*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-35103166IPR001471AP2/ERF domain
PROSITE profilePS5103220.745103160IPR001471AP2/ERF domain
CDDcd000185.54E-29103159No hitNo description
SuperFamilySSF541711.57E-19103160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-28103159IPR001471AP2/ERF domain
PfamPF008476.4E-12103153IPR001471AP2/ERF domain
PRINTSPR003671.2E-9104115IPR001471AP2/ERF domain
PRINTSPR003671.2E-9126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MERGSRRVKF TEHCTVKPVP AKPSNGSPRV VRISFTDPFA TDSSSSDDEE DDKACPTPRV  60
KRYVEEIRFG ETKPPRKAAR CKAEKKGGGE RKAKADVSAN PIKYRGVRQR RWGSFAAEIR  120
DSSTRTRIWL GTFATAEEAA VAYDRAAIRL KGHNALTNFL TPPSPEETPV IDLKTVNGCD  180
SGSQSLCSPT SVLRFNVKEE TELETAEVKP DVAGLFPDPY SLPELSLAGE YFWDSEFPPA  240
PLFVDEIEIH KPVPNRREDD EPEEFSFHLS GDFDATPWDV DNFFELD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18104159662ATERF1
3gcc_A2e-18104159662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590289.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590289.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotQ9M3746e-95CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A0D3CV710.0A0A0D3CV71_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H9280.0A0A3P6H928_BRAOL; Uncharacterized protein
STRINGBo6g077880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-83cytokinin response factor 6