PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013590172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 307aa MW: 32896.6 Da PI: 8.4755 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 193 | 1.1e-59 | 2 | 136 | 1 | 133 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspessl 94 ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkgs+++ e++e+++ sa++sp++s+ XP_013590172.1 2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEQDGTTYRKGSSRPvERMEIGVGSATTSPCASY 96 5899*********************************************************************9999****************** PP DUF822 95 qsslkssalaspvesysas.pksssfpspssldsislasa 133 + s++ss++ sp + +s +s +p ++l+++s++sa XP_013590172.1 97 NPSPVSSNFMSPSYANLTSgDGQSLIPWLKHLSTTSSSSA 136 *999999999987554443145566666666666655554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.0E-53 | 3 | 133 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60 WIVEQDGTTY RKGSSRPVER MEIGVGSATT SPCASYNPSP VSSNFMSPSY ANLTSGDGQS 120 LIPWLKHLST TSSSSASSSS RLPSFMYLPG GSISAPVTPP LSSPTARGMN QINNSFFVSS 180 TPPSPTRQQT VPGSEWFAGI QLAQSVPASP TFSLVSRNPF GFREDQLASA GGGGGSRMWT 240 PGQSGTCSPA IPQTGDVPMS EAVAPPEFAF GSNANGLVKA WEGERIHEES GSDDLELTLG 300 NSSTRCN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 5e-22 | 6 | 73 | 372 | 439 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 5e-22 | 6 | 73 | 372 | 439 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 5e-22 | 6 | 73 | 372 | 439 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 5e-22 | 6 | 73 | 372 | 439 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00248 | DAP | Transfer from AT1G78700 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013590172.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590172.1 | 0.0 | PREDICTED: BES1/BZR1 homolog protein 4 | ||||
Refseq | XP_013685899.1 | 0.0 | BES1/BZR1 homolog protein 4 | ||||
Swissprot | Q9ZV88 | 1e-161 | BEH4_ARATH; BES1/BZR1 homolog protein 4 | ||||
TrEMBL | A0A0D3D1M4 | 0.0 | A0A0D3D1M4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G203 | 0.0 | A0A3P6G203_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g122190.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1917 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78700.1 | 1e-154 | BES1/BZR1 homolog 4 |