PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590039.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Whirly
Protein Properties Length: 242aa    MW: 26472.2 Da    PI: 10.1007
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly199.93.4e-62602001139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsf..alsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                     +++k++aal+v++v+ptf++++ gnl+++r+G++++++++a++erkydWekkq+f  als+tev++++++++++s+effhdp++k+sn+G+vrk+
  XP_013590039.1  60 AIFKGRAALSVEPVLPTFTKIEPGNLRIDRRGSVMMTFMPAVSERKYDWEKKQVFlfALSPTEVGSVISMGPQDSSEFFHDPSMKSSNAGQVRKS 154
                     59***************************************************95338************************************* PP

          Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     l+++Pl+d +G+f++lsvt +++++n++++vPvskaefavl+s+++
  XP_013590039.1 155 LSIKPLADSTGYFFQLSVTDNIQNSNDRIVVPVSKAEFAVLKSAFS 200
                     *******************************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.2E-7049214IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.28E-6252216IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.7E-5861198IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MMKQARTLLS RSLCNQSSSL FEGSSRSSAF RGFATWVDSS TTKRADAAKP SSGRVFAPYA  60
IFKGRAALSV EPVLPTFTKI EPGNLRIDRR GSVMMTFMPA VSERKYDWEK KQVFLFALSP  120
TEVGSVISMG PQDSSEFFHD PSMKSSNAGQ VRKSLSIKPL ADSTGYFFQL SVTDNIQNSN  180
DRIVVPVSKA EFAVLKSAFS FALPHILGWD RITGGDVGIA AQGIASLPKA DPMQLELEWG  240
KE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A5e-94462143168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B5e-94462143168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C5e-94462143168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D5e-94462143168Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590039.11e-178PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial isoform X2
SwissprotQ8VYF71e-115WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0D3CZT61e-173A0A0D3CZT6_BRAOL; Uncharacterized protein
STRINGBo6g112840.11e-174(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-112WHIRLY 2