PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013590039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 242aa MW: 26472.2 Da PI: 10.1007 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 199.9 | 3.4e-62 | 60 | 200 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsf..alsatevaelvdlaskesceffhdpaakgsneGkvrka 93 +++k++aal+v++v+ptf++++ gnl+++r+G++++++++a++erkydWekkq+f als+tev++++++++++s+effhdp++k+sn+G+vrk+ XP_013590039.1 60 AIFKGRAALSVEPVLPTFTKIEPGNLRIDRRGSVMMTFMPAVSERKYDWEKKQVFlfALSPTEVGSVISMGPQDSSEFFHDPSMKSSNAGQVRKS 154 59***************************************************95338************************************* PP Whirly 94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 l+++Pl+d +G+f++lsvt +++++n++++vPvskaefavl+s+++ XP_013590039.1 155 LSIKPLADSTGYFFQLSVTDNIQNSNDRIVVPVSKAEFAVLKSAFS 200 *******************************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.2E-70 | 49 | 214 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.28E-62 | 52 | 216 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.7E-58 | 61 | 198 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MMKQARTLLS RSLCNQSSSL FEGSSRSSAF RGFATWVDSS TTKRADAAKP SSGRVFAPYA 60 IFKGRAALSV EPVLPTFTKI EPGNLRIDRR GSVMMTFMPA VSERKYDWEK KQVFLFALSP 120 TEVGSVISMG PQDSSEFFHD PSMKSSNAGQ VRKSLSIKPL ADSTGYFFQL SVTDNIQNSN 180 DRIVVPVSKA EFAVLKSAFS FALPHILGWD RITGGDVGIA AQGIASLPKA DPMQLELEWG 240 KE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 5e-94 | 46 | 214 | 3 | 168 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 5e-94 | 46 | 214 | 3 | 168 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 5e-94 | 46 | 214 | 3 | 168 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 5e-94 | 46 | 214 | 3 | 168 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013590039.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590039.1 | 1e-178 | PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial isoform X2 | ||||
Swissprot | Q8VYF7 | 1e-115 | WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A0D3CZT6 | 1e-173 | A0A0D3CZT6_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g112840.1 | 1e-174 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-112 | WHIRLY 2 |