PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590037.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Whirly
Protein Properties Length: 243aa    MW: 26559.3 Da    PI: 10.1007
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590037.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly199.93.4e-62612011139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsf..alsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                     +++k++aal+v++v+ptf++++ gnl+++r+G++++++++a++erkydWekkq+f  als+tev++++++++++s+effhdp++k+sn+G+vrk+
  XP_013590037.1  61 AIFKGRAALSVEPVLPTFTKIEPGNLRIDRRGSVMMTFMPAVSERKYDWEKKQVFlfALSPTEVGSVISMGPQDSSEFFHDPSMKSSNAGQVRKS 155
                     59***************************************************95338************************************* PP

          Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     l+++Pl+d +G+f++lsvt +++++n++++vPvskaefavl+s+++
  XP_013590037.1 156 LSIKPLADSTGYFFQLSVTDNIQNSNDRIVVPVSKAEFAVLKSAFS 201
                     *******************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.2E-7050215IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.35E-6253217IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.7E-5862199IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMKQARTLLS SRSLCNQSSS LFEGSSRSSA FRGFATWVDS STTKRADAAK PSSGRVFAPY  60
AIFKGRAALS VEPVLPTFTK IEPGNLRIDR RGSVMMTFMP AVSERKYDWE KKQVFLFALS  120
PTEVGSVISM GPQDSSEFFH DPSMKSSNAG QVRKSLSIKP LADSTGYFFQ LSVTDNIQNS  180
NDRIVVPVSK AEFAVLKSAF SFALPHILGW DRITGGDVGI AAQGIASLPK ADPMQLELEW  240
GKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A5e-94472153168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B5e-94472153168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C5e-94472153168Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D5e-94472153168Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590037.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590037.11e-178PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
SwissprotQ8VYF71e-113WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A3P6GY101e-174A0A3P6GY10_BRAOL; Uncharacterized protein
STRINGBo6g112840.11e-172(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123582731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-104WHIRLY 2