PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 387aa MW: 41502.5 Da PI: 8.7409 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.4e-11 | 3 | 26 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 elCr+f++ G C+yG+rC++ H++ XP_013590034.1 3 KELCRNFQQ-GSCRYGERCRYLHPQ 26 69*******.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-7 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.924 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-6 | 2 | 25 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.3E-9 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-8 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MRKELCRNFQ QGSCRYGERC RYLHPQQNKT SNNPFGFGVQ GGSNSNRPNQ SQQPFQNTWQ 60 RNPSSGSGGG ASSSTQQSSK QTQQADHKCT DPAACKRVIQ EDLKNERPMW KLTCYAHCKH 120 LPCDVSGDIS YEELRAMAYE ESKRGVPLQS IVERERNLQN AKVAEFENFL RSPYRGAATS 180 NQTPSIFPPA TQVNASPGGF SAFNQQPALF PNTNAGGGTP NPFGRFNQQP NAFSVNTPQP 240 APSGPSGFLS QPSSFGPGPA APSGFQPSVS FKPASFGPGP VAPSGFQSQP ASFGPGPGLS 300 TPPQNSSIFP SVTPTPAFNT NQNNQTGFSF NSPVASFTSQ AVDTTNTPSG TELQAGGAPV 360 DNSIWLKEKW NPGEIPEQAP PDAFVHR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590034.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189493 | 1e-151 | AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590034.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 | ||||
Swissprot | Q9FWS3 | 1e-167 | C3H16_ARATH; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | M4DH74 | 0.0 | M4DH74_BRARP; Uncharacterized protein | ||||
STRING | Bra015851.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.2 | 1e-157 | C3H family protein |