PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 402aa MW: 43161.3 Da PI: 8.7409 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.5e-11 | 3 | 26 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 elCr+f++ G C+yG+rC++ H++ XP_013590033.1 3 KELCRNFQQ-GSCRYGERCRYLHPQ 26 69*******.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-7 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.924 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.38E-6 | 2 | 25 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-8 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-9 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MRKELCRNFQ QGSCRYGERC RYLHPQQTIP NNPFGFGTQQ QQNKTSNNPF GFGVQGGSNS 60 NRPNQSQQPF QNTWQRNPSS GSGGGASSST QQSSKQTQQA DHKCTDPAAC KRVIQEDLKN 120 ERPMWKLTCY AHCKHLPCDV SGDISYEELR AMAYEESKRG VPLQSIVERE RNLQNAKVAE 180 FENFLRSPYR GAATSNQTPS IFPPATQVNA SPGGFSAFNQ QPALFPNTNA GGGTPNPFGR 240 FNQQPNAFSV NTPQPAPSGP SGFLSQPSSF GPGPAAPSGF QPSVSFKPAS FGPGPVAPSG 300 FQSQPASFGP GPGLSTPPQN SSIFPSVTPT PAFNTNQNNQ TGFSFNSPVA SFTSQAVDTT 360 NTPSGTELQA GGAPVDNSIW LKEKWNPGEI PEQAPPDAFV HR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590033.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189493 | 1e-151 | AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590033.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 | ||||
Swissprot | Q9FWS3 | 1e-174 | C3H16_ARATH; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | M4DH74 | 0.0 | M4DH74_BRARP; Uncharacterized protein | ||||
STRING | Bra015851.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10724 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.2 | 1e-164 | C3H family protein |