PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590011.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 331aa    MW: 37102.6 Da    PI: 6.1908
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590011.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.9e-32190245156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++WtpeLH+rFv+a++qLGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+
  XP_013590011.1 190 KQRRCWTPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 245
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.122187247IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-28188248IPR009057Homeodomain-like
SuperFamilySSF466896.72E-18188248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-26190245IPR006447Myb domain, plants
PfamPF002493.0E-9192243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGSLGDELSL GSRRHCSMPT KIYGFPTKIT NVKKLEEEKM KIQGSDLELP LCLQILNDAI  60
SYLKEESKRC SEMDTQPFLK DFISGDGPLL KREEKKLLQL WREDDHISNG RFSDTNNKLD  120
DIEINEEKPS NGLSMLLKTP EVETGLGLGL ASSSMFNGGR RKGTASCGFT SNVSVPQPPP  180
YLQQQALSRK QRRCWTPELH RRFVDALQQL GGPGVATPKQ IREHMQEEGL TNDEVKSHLQ  240
KYRLHIRKSN SNLEKQSVVV LGFNLWNSSS KEEEEGTGEG RESSKRNNSQ SDSPQGPLHL  300
PCTTTTTTTG GDSCMEDAED AKSESFQIWR D
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013590011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590011.10.0PREDICTED: uncharacterized protein LOC106298431
SwissprotQ9FX841e-120HHO6_ARATH; Transcription factor HHO6
TrEMBLA0A0D3CPI00.0A0A0D3CPI0_BRAOL; Uncharacterized protein
STRINGBo6g018370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139271824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.13e-99G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]