PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013589881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 307aa MW: 34902 Da PI: 4.7236 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 102.8 | 2.9e-32 | 40 | 134 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++r+w+e+De+++L+Gl++++ kt +ps d+d+f+ fv++si++++sk+ql++K+r+L++Kf +++++++g++p f++ d+++f++s++iWg XP_013589881.1 40 IKRIWNEDDELSILKGLVEYRVKTRHDPSFDWDGFFCFVQGSIHVRFSKEQLFSKVRKLRRKFVLHMERIDRGEDPLFTRLTDSQAFGYSNMIWG 134 68********************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.8E-26 | 41 | 134 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MEPFLQMATL KRLNFSDTCL QKSPSEEVST KKKKLASPVI KRIWNEDDEL SILKGLVEYR 60 VKTRHDPSFD WDGFFCFVQG SIHVRFSKEQ LFSKVRKLRR KFVLHMERID RGEDPLFTRL 120 TDSQAFGYSN MIWGLNQGEV AANGGGTEKA PGDTQEDEPL DNAGRVNDNG DESSKLDGKD 180 SEFADGGMEN VMQIESDENA SREKGRVSND EPVNENGAEK GELDGKESHD DDDDELRVVE 240 DAFETTILQG LSDWQRNLQL KKLMMNLGTE KRKELSNEWK ALCSEEVKLK IKKLRFTVKL 300 VEAANDG |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots. {ECO:0000269|PubMed:18162594}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013589881.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589881.1 | 0.0 | PREDICTED: uncharacterized protein LOC106298324 isoform X1 | ||||
Swissprot | Q8VYD2 | 6e-73 | STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1 | ||||
TrEMBL | A0A078GNW2 | 0.0 | A0A078GNW2_BRANA; BnaC06g12070D protein | ||||
TrEMBL | A0A0D3CSS7 | 0.0 | A0A0D3CSS7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FT81 | 0.0 | A0A3P6FT81_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g057560.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6117 | 17 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25650.1 | 3e-75 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
---|---|---|---|
|