PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589881.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 307aa    MW: 34902 Da    PI: 4.7236
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589881.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.82.9e-3240134397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     ++r+w+e+De+++L+Gl++++ kt  +ps d+d+f+ fv++si++++sk+ql++K+r+L++Kf  +++++++g++p f++  d+++f++s++iWg
  XP_013589881.1  40 IKRIWNEDDELSILKGLVEYRVKTRHDPSFDWDGFFCFVQGSIHVRFSKEQLFSKVRKLRRKFVLHMERIDRGEDPLFTRLTDSQAFGYSNMIWG 134
                     68********************************************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-2641134IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEPFLQMATL KRLNFSDTCL QKSPSEEVST KKKKLASPVI KRIWNEDDEL SILKGLVEYR  60
VKTRHDPSFD WDGFFCFVQG SIHVRFSKEQ LFSKVRKLRR KFVLHMERID RGEDPLFTRL  120
TDSQAFGYSN MIWGLNQGEV AANGGGTEKA PGDTQEDEPL DNAGRVNDNG DESSKLDGKD  180
SEFADGGMEN VMQIESDENA SREKGRVSND EPVNENGAEK GELDGKESHD DDDDELRVVE  240
DAFETTILQG LSDWQRNLQL KKLMMNLGTE KRKELSNEWK ALCSEEVKLK IKKLRFTVKL  300
VEAANDG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots. {ECO:0000269|PubMed:18162594}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589881.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589881.10.0PREDICTED: uncharacterized protein LOC106298324 isoform X1
SwissprotQ8VYD26e-73STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1
TrEMBLA0A078GNW20.0A0A078GNW2_BRANA; BnaC06g12070D protein
TrEMBLA0A0D3CSS70.0A0A0D3CSS7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FT810.0A0A3P6FT81_BRAOL; Uncharacterized protein
STRINGBo6g057560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.13e-75DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]