PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013589879.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 375aa MW: 42945.2 Da PI: 6.3831 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.7 | 1.6e-10 | 96 | 139 | 4 | 47 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +k rr+++NReAAr+sR+R+ka++++Lee +L++ ++L k XP_013589879.1 96 DKMKRRLAQNREAARKSRLRRKAYVQQLEESRLKLSQLEQELEK 139 7899**************************98888888776654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-4 | 89 | 151 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.5E-8 | 90 | 140 | No hit | No description |
PROSITE profile | PS50217 | 9.37 | 95 | 139 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.8E-7 | 96 | 139 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.09E-6 | 97 | 140 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 100 | 115 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.4E-30 | 179 | 253 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MMSSFSPTQL ASLRDMGIYE PFQQLVSWGN VYKSDINDHS PNTASSSVIQ VDARIDDHNN 60 IVKSNYASTS HNHIEAEPSS NDHQDVDDDD DDRIHDKMKR RLAQNREAAR KSRLRRKAYV 120 QQLEESRLKL SQLEQELEKA KQQGLRVSNS IPSGSITNAR IATFEMEHSH WLEEQSRRVS 180 ELRIALQAHI SDIELRMLVE SCLNHYANLF RMKSDAAKAD VFYLISGMWR TSTERFFQWI 240 GGFRPSELLN VVMPYLQPLT DQQVLEVRNL QQSSQQAEEA LSQGIEKLQQ SLVENIVVDA 300 FSMDYPPQMA AALENLQALE GFVNQADHLR QQTLQQMAKI LTTRQSARGL LALGEYLHRL 360 RALSSLWAAR PREPT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013589879.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353384 | 0.0 | AK353384.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-N08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589879.1 | 0.0 | PREDICTED: transcription factor TGA7 | ||||
Refseq | XP_013650012.1 | 0.0 | transcription factor TGA7-like | ||||
Refseq | XP_013650014.1 | 0.0 | transcription factor TGA7-like | ||||
Refseq | XP_022560826.1 | 0.0 | transcription factor TGA7-like | ||||
Swissprot | Q93ZE2 | 0.0 | TGA7_ARATH; Transcription factor TGA7 | ||||
TrEMBL | A0A0D3D1G4 | 0.0 | A0A0D3D1G4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6H3T0 | 0.0 | A0A3P6H3T0_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g121590.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3061 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77920.1 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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