PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013589805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 466aa MW: 51132.4 Da PI: 6.6785 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.2 | 7.4e-07 | 216 | 236 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_013589805.1 216 CTICGKGFKRDANLRMHMRGH 236 *******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.468 | 214 | 241 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.024 | 214 | 236 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.41E-5 | 215 | 238 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 216 | 267 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 216 | 236 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 50 | 265 | 298 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 45 | 303 | 325 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
METGEDDLCK NNWGSASILD YEMAREDEEE EPNLHVFKAS SSCQDNNNNG GQASVDFLQG 60 VKAQAWDPRT MLCNLSFMEH KIHELQGLVH LILGRNGQLQ DEQRQLVTAD LTSIIIQLIS 120 TAGSLLPSVK HHNMSTTAPG SALFPFPREA NNLASQTLNN NGGASQELVL PKPIVGESHE 180 MKNEDDAEEG ENLPPGSYEI KQLEKEEILA PHTNFCTICG KGFKRDANLR MHMRGHGDEY 240 KTPAALAKPT KETVPGSEQM LVKRYSCPFP GCKRNKDHKK FQPLKTILCV KNHYKRTHCD 300 KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP 360 LEETKPSAAA SSQRGSSGCG NNNNNAGMVS FNLGSATNAN QETSQPCFMD GKISFEESFS 420 PLSFDTCNFG GFPRSIFDDS FQMLISSACG CSPINGGDGS VSDTSV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013589805.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589804.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Refseq | XP_013589805.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Refseq | XP_013589806.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Refseq | XP_013589807.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A0D3CRS7 | 0.0 | A0A0D3CRS7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GWX7 | 0.0 | A0A3P6GWX7_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g044160.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 0.0 | C2H2 family protein |