PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589798.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 282aa    MW: 31760.9 Da    PI: 9.878
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind55.13.4e-17111091394
       GAGA_bind  13 yye...................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                     yy+                   ++++l   +++++ms++aerda+++er+ al++k++a+a+rd+a+ qrdkal+ r++a++erd++l al+++e
  XP_013589798.1  11 YYKegthsvwntmpnhhqtkedQHNALV--MNQKIMSILAERDAALKERDDALAAKQEALAARDEALDQRDKALSLRDNAILERDSALSALQFRE 103
                     6666666666666666666544556666..99*************************************************************** PP

       GAGA_bind  89 nslasa 94 
                     ++l+  
  XP_013589798.1 104 HNLNYI 109
                     *99833 PP
2GAGA_bind249.71.9e-76134281151300
       GAGA_bind 151 kkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLP 245
                       ++r+kk k ++++k k+ +e+ +++v++++  ++ +++++s  ++ln v++De+t+PvP+C+CtG+ r CYkWGnGGWqS+CCttt+S yPLP
  XP_013589798.1 134 APSKRKKKRKPETRSKGKRVGEDLNHHVASPG--KKCRKDWDSNVVGLNLVTFDETTMPVPMCTCTGTARHCYKWGNGGWQSSCCTTTLSLYPLP 226
                     22344555555666688888899999999999..57*********************************************************** PP

       GAGA_bind 246 vstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                     +++++r++R++grKmS+++f++lL++La++G+dls pvDLkd+WA+HGtn+++ti
  XP_013589798.1 227 QMPNKRHSRVGGRKMSGNVFSRLLSRLAGQGHDLSSPVDLKDYWARHGTNRYITI 281
                     ******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.7E-1261282IPR010409GAGA-binding transcriptional activator
PfamPF062171.0E-8617281IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MESDGRYNPD YYKEGTHSVW NTMPNHHQTK EDQHNALVMN QKIMSILAER DAALKERDDA  60
LAAKQEALAA RDEALDQRDK ALSLRDNAIL ERDSALSALQ FREHNLNYIL SRAKLGSSHL  120
SNPSPLSTIP HEAAPSKRKK KRKPETRSKG KRVGEDLNHH VASPGKKCRK DWDSNVVGLN  180
LVTFDETTMP VPMCTCTGTA RHCYKWGNGG WQSSCCTTTL SLYPLPQMPN KRHSRVGGRK  240
MSGNVFSRLL SRLAGQGHDL SSPVDLKDYW ARHGTNRYIT IM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142KRKKKRK
2138143KKKRKP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589798.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895210.0AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589721.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_013589798.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_013589871.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
SwissprotF4JUI31e-149BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLA0A0D3A0U60.0A0A0D3A0U6_BRAOL; Uncharacterized protein
STRINGBo1g002230.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-135basic pentacysteine 5