PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589725.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 223aa    MW: 24460.5 Da    PI: 7.5967
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.51.2e-2083117135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  XP_013589725.1  83 CANCDTTSTPLWRNGPSGPKSLCNACGIRFKKEER 117
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.12777113IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-2077129IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-1380117No hitNo description
Gene3DG3DSA:3.30.50.101.8E-1781117IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.69E-1482114No hitNo description
PfamPF003203.8E-1883117IPR000679Zinc finger, GATA-type
PROSITE patternPS00344083108IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGLSMFFSSE NDVVHHHSSP YASVDCTLSL GTPSTRLFND DDDRRFSTHT SNNISNPLGS  60
WDFLHGGKKA GGGGGNNLVA RRCANCDTTS TPLWRNGPSG PKSLCNACGI RFKKEERRTS  120
AAGNSTSGGG LTAFGVPASD HHGGADNYYN NNSNNNHYCA STSPWTHHQQ QNTQRVPYYS  180
PANNNKYSFV DDVRESHDIT TDPFLSWRLN VADRTRLVHD CTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16573GGKKAGGGG
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout the inflorescence meristem (IM) and early stages of floral primordia. In developping flowers, restricted to the innert hree whorls, speci fi cally in the petals, stamens, and carpels. Within the stamens, mostly detected in the anther locules as well as in the vascular strands. In carpels, mainly present in ovules. {ECO:0000269|PubMed:23335616}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589725.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893730.0AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589725.11e-166PREDICTED: GATA transcription factor 19-like
SwissprotQ6QPM22e-91GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A0D3A1H71e-165A0A0D3A1H7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F5P01e-165A0A3P6F5P0_BRAOL; Uncharacterized protein
STRINGBo1g005530.11e-165(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-84GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]