PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013589721.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 282aa MW: 31760.9 Da PI: 9.878 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 55.1 | 3.4e-17 | 11 | 109 | 13 | 94 |
GAGA_bind 13 yye...................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 yy+ ++++l +++++ms++aerda+++er+ al++k++a+a+rd+a+ qrdkal+ r++a++erd++l al+++e XP_013589721.1 11 YYKegthsvwntmpnhhqtkedQHNALV--MNQKIMSILAERDAALKERDDALAAKQEALAARDEALDQRDKALSLRDNAILERDSALSALQFRE 103 6666666666666666666544556666..99*************************************************************** PP GAGA_bind 89 nslasa 94 ++l+ XP_013589721.1 104 HNLNYI 109 *99833 PP | |||||||
2 | GAGA_bind | 249.7 | 1.9e-76 | 134 | 281 | 151 | 300 |
GAGA_bind 151 kkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLP 245 ++r+kk k ++++k k+ +e+ +++v++++ ++ +++++s ++ln v++De+t+PvP+C+CtG+ r CYkWGnGGWqS+CCttt+S yPLP XP_013589721.1 134 APSKRKKKRKPETRSKGKRVGEDLNHHVASPG--KKCRKDWDSNVVGLNLVTFDETTMPVPMCTCTGTARHCYKWGNGGWQSSCCTTTLSLYPLP 226 22344555555666688888899999999999..57*********************************************************** PP GAGA_bind 246 vstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 +++++r++R++grKmS+++f++lL++La++G+dls pvDLkd+WA+HGtn+++ti XP_013589721.1 227 QMPNKRHSRVGGRKMSGNVFSRLLSRLAGQGHDLSSPVDLKDYWARHGTNRYITI 281 ******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 6.7E-126 | 1 | 282 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.0E-86 | 17 | 281 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MESDGRYNPD YYKEGTHSVW NTMPNHHQTK EDQHNALVMN QKIMSILAER DAALKERDDA 60 LAAKQEALAA RDEALDQRDK ALSLRDNAIL ERDSALSALQ FREHNLNYIL SRAKLGSSHL 120 SNPSPLSTIP HEAAPSKRKK KRKPETRSKG KRVGEDLNHH VASPGKKCRK DWDSNVVGLN 180 LVTFDETTMP VPMCTCTGTA RHCYKWGNGG WQSSCCTTTL SLYPLPQMPN KRHSRVGGRK 240 MSGNVFSRLL SRLAGQGHDL SSPVDLKDYW ARHGTNRYIT IM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 142 | KRKKKRK |
2 | 138 | 143 | KKKRKP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013589721.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189521 | 0.0 | AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589721.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE5-like | ||||
Refseq | XP_013589798.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE5-like | ||||
Refseq | XP_013589871.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE5-like | ||||
Swissprot | F4JUI3 | 1e-149 | BPC5_ARATH; Protein BASIC PENTACYSTEINE5 | ||||
TrEMBL | A0A0D3A0U6 | 0.0 | A0A0D3A0U6_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g002230.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4090 | 26 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38910.2 | 1e-135 | basic pentacysteine 5 |