PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589625.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 407aa    MW: 46168.6 Da    PI: 7.3067
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.4e-52151421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     l pGfrFhPtdeelv++yL++kve+++l++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t+ g+Wkatg+d++++s+
  XP_013589625.1  15 LLPGFRFHPTDEELVSFYLRRKVEHRPLSI-KLITQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSTRPNRVTSVGFWKATGTDRPIYSS 108
                     579***************************.89***************7777889***************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +gl+k+Lvfykgra kg+ktdW+mhe+rl
  XP_013589625.1 109 dGSKCIGLRKSLVFYKGRAAKGVKTDWMMHEFRL 142
                     66677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-5911169IPR003441NAC domain
PROSITE profilePS5100557.74815169IPR003441NAC domain
PfamPF023652.6E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGENNGEAKK MEDVLLPGFR FHPTDEELVS FYLRRKVEHR PLSIKLITQL DIYKYDPWDL  60
PKFAMTGEKE WYFYCPRDRK YRNSTRPNRV TSVGFWKATG TDRPIYSSDG SKCIGLRKSL  120
VFYKGRAAKG VKTDWMMHEF RLPSASTHNL SDTHLSPNDS WAICRIFRKT NTTVLRAISQ  180
SVSSLPTEAS TDTETYPKPS NIAQMFPEII PQNNAPFTFY KKNMNGTKPC SYYEEKEATN  240
KTSTSTTTSS FSCMDFTSPA SPGPYLDQQY LRSLLLASQE TQPSQLPKFI NNNDISSFLL  300
STPSSNSSFL GGYTNQIGSN IDLTTAILAQ EQCPALVNLS QEYQDIGFEE NNGGANQDHH  360
HKLKFGDVSS TMVGDQHQNQ RHHMLMESYY SSFSTTNDDL PTCFSIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-541517317169NO APICAL MERISTEM PROTEIN
1ut4_B1e-541517317169NO APICAL MERISTEM PROTEIN
1ut7_A1e-541517317169NO APICAL MERISTEM PROTEIN
1ut7_B1e-541517317169NO APICAL MERISTEM PROTEIN
3swm_A1e-541517320172NAC domain-containing protein 19
3swm_B1e-541517320172NAC domain-containing protein 19
3swm_C1e-541517320172NAC domain-containing protein 19
3swm_D1e-541517320172NAC domain-containing protein 19
3swp_A1e-541517320172NAC domain-containing protein 19
3swp_B1e-541517320172NAC domain-containing protein 19
3swp_C1e-541517320172NAC domain-containing protein 19
3swp_D1e-541517320172NAC domain-containing protein 19
4dul_A1e-541517317169NAC domain-containing protein 19
4dul_B1e-541517317169NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589625.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589625.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-155FEZ_ARATH; Protein FEZ
TrEMBLA0A0D3CZC50.0A0A0D3CZC5_BRAOL; Uncharacterized protein
STRINGBo6g109250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-145NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]