PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013589599.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 592aa MW: 66640.6 Da PI: 4.8138 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 43.3 | 8e-14 | 205 | 254 | 4 | 54 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 +Wt + H +F+ a++ L G+++ Pk+ile+mk L+ +v S LQkY+ XP_013589599.1 205 NVWTRDRHMKFLAAISIL-GEKESRPKSILEIMKDSNLSQRQVGSYLQKYK 254 58****************.999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 16.908 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.4E-5 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 8.45E-9 | 20 | 166 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.1E-8 | 20 | 151 | No hit | No description |
SuperFamily | SSF46689 | 5.38E-9 | 205 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-12 | 205 | 254 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.8E-14 | 205 | 257 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MAENMVNLTE NIIPESTGVI LLIDHDAISV ASLIPMLKQR SHKDVMSVNG ASEAISVIEK 60 QKDIGLVIAN VELSDTNDFL TAMHHKEIHL ILIGTEIHIK ETSDLLTKRA CSCLKKPISE 120 NDIDNMLQLV LPNKRQEWEK INVAEKRENI VEERMKQMKA FRDHIKRQGT SQSSLLGRRP 180 LNKTFTSSQM YQKGKSIADV EGCKNVWTRD RHMKFLAAIS ILGEKESRPK SILEIMKDSN 240 LSQRQVGSYL QKYKFQVEII NKTLTRNEWK STDKTYEYPS DYVYPFKASN LAKTLIESNS 300 MWCSLRKTKS SSLSTVQYSF KRSAAEKDRM PKFHIGEKSG LHRHSLSGSR VGASNLDAFQ 360 KESAKICISQ SNPNPSQPSS YVLETNKNPL DMNQMGRVSF GENHGLSQDM IFNGTKSNHL 420 GLVSGETSHI ETPLETDTNQ MDWDWFSSDE AYAILEDLTV PETNINQVGL VPGETSFAAL 480 DNVAPPENNT NEIGLVPNQE GNDDIPIEDL ISFDTDIINE MDDLDAWLEN YNSFQGDVPL 540 PASCNDHDLA FTPTTSQHQN IEAANPREAT EEGNHLDDDS DENLDWIDDI FA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013589599.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189489 | 0.0 | AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589599.1 | 0.0 | PREDICTED: putative two-component response regulator-like APRR6 | ||||
Refseq | XP_013699703.1 | 0.0 | putative two-component response regulator-like APRR6 | ||||
Refseq | XP_022569471.1 | 0.0 | putative two-component response regulator-like APRR6 | ||||
TrEMBL | A0A0D3CYW2 | 0.0 | A0A0D3CYW2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6QL74 | 0.0 | A0A3N6QL74_BRACR; Uncharacterized protein | ||||
STRING | Bo6g106630.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13685 | 14 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68210.1 | 1e-110 | pseudo-response regulator 6 |