PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589561.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 293aa    MW: 33234 Da    PI: 6.0502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589561.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-18137187256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a++  + k++g+
  XP_013589561.1 137 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDLQAFKFRGH 187
                     59****999.**********954...4************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-33136195No hitNo description
SMARTSM003808.0E-38137200IPR001471AP2/ERF domain
PROSITE profilePS5103224.118137194IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-23137195IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-31137195IPR001471AP2/ERF domain
PRINTSPR003672.7E-11138149IPR001471AP2/ERF domain
PfamPF008472.7E-13138187IPR001471AP2/ERF domain
PRINTSPR003672.7E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDFDEELNLC TTGKSIVPSS GEASSTTSPR TIKKMRNPDH RSKPYFPFSS PYSNSLPAFP  60
FSLDPTIQNQ QQQQLGYLPI NPTIQGQNQM ISFSPQQPQQ HQQHMFKYWS DTLNLSPRGR  120
MMMMNQESVL PYSSTKLYRG VRQRQWGKWV AEIRKPRSRA RLWLGTFDTA EEAAMAYDLQ  180
AFKFRGHNAT LNFPERFVNK EIEPSDSAGA SSSLHEKQPE TRQPEEQKEV NLESKEVAVS  240
DGVVEEGMAE AWFNAVAAGW GPESPLWDDL DNSQFSQSST SSSASCPMRP FSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20136196162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589561.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589561.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
SwissprotQ9M0J31e-128ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A0D3A7730.0A0A0D3A773_BRAOL; Uncharacterized protein
STRINGBo1g051230.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-117ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]