PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013589441.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 295aa MW: 32756.2 Da PI: 6.9168

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013589441.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.9	1.2e-29	130	188	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ver+ ++ + ++itY++eH+he XP_013589441.1 130 SDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERNPQNSEKFTITYTNEHDHE 188 7************************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.1E-30	115	190	IPR003657	WRKY domain
PROSITE profile	PS50811	32.202	124	190	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-25	124	190	IPR003657	WRKY domain
SMART	SM00774	2.5E-34	129	189	IPR003657	WRKY domain
Pfam	PF03106	1.8E-24	131	187	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MDEGDLEAVV RGYSSCSDAF SGKSSGGFSP SFCLPVETAS LYEEEMETTG LDELGVLYKP 60 FYTSSTQTLT NPVSVSEDSG RSRDGKKQRT HGCLLANGSR VNRIRIPESW KRKNQQKRVV 120 EQVKEENLLS DAWAWRKYGQ KPIKGSPYPR SYYRCSSSKG CLARKQVERN PQNSEKFTIT 180 YTNEHDHEIP TRRNSLAGTT RAKSSKPKPS ITKKSGKQVV SSPTSNPVIT SGDESSVVVQ 240 AMEVAEMSTY QTTGEIEGTS NNLPTDLSSD TGHNPSDFDE ILNSPEFING YLWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-18	119	190	4	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013589441.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013589441.1	0.0	PREDICTED: probable WRKY transcription factor 29 isoform X2
Swissprot	Q9SUS1	1e-161	WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBL	A0A0D3A5M1	0.0	A0A0D3A5M1_BRAOL; Uncharacterized protein
STRING	Bo1g035810.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23550.1	1e-131	WRKY family protein

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Liu XQ, et al. OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1. Cell Res., 2005. 15(8): p. 593-603 [PMID:16117849] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Yi SY,Shirasu K,Moon JS,Lee SG,Kwon SY The activated SA and JA signaling pathways have an influence on flg22-triggered oxidative burst and callose deposition. PLoS ONE, 2014. 9(2): p. e88951 [PMID:24586453] Cambiagno DA,Lonez C,Ruysschaert JM,Alvarez ME The synthetic cationic lipid diC14 activates a sector of the Arabidopsis defence network requiring endogenous signalling components. Mol. Plant Pathol., 2015. 16(9): p. 963-72 [PMID:25727690] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Li Y,Williams B,Dickman M Arabidopsis B-cell lymphoma2 (Bcl-2)-associated athanogene 7 (BAG7)-mediated heat tolerance requires translocation, sumoylation and binding to WRKY29. New Phytol., 2017. 214(2): p. 695-705 [PMID:28032645] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]