PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589356.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 315aa    MW: 35354 Da    PI: 8.449
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-1983134156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f t eeAa a+++a++kl+g+
  XP_013589356.1  83 CRYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATSEEAAMAYDEAALKLYGH 134
                     78*****999.**********965...5*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.20E-3083143No hitNo description
PfamPF008471.8E-1483134IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2184142IPR016177DNA-binding domain
PROSITE profilePS5103223.20984141IPR001471AP2/ERF domain
SMARTSM003804.5E-3784147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-3084142IPR001471AP2/ERF domain
PRINTSPR003676.2E-108596IPR001471AP2/ERF domain
PRINTSPR003676.2E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAGAVASLFK RMGFWGVVNV VSIGSLPVLA YLCGQQEKQL AWLDEQEKRV IASMIARGIR  60
SSSMKQWKKG PARGKGGPQN ALCRYRGVRQ RTWGKWVAEI REPKKRTRLW LGSFATSEEA  120
AMAYDEAALK LYGHDAYLNL PHLQQRKQGP PVNNTQRFKW VPSKKFISMF PSRGGMLNVN  180
AQASLHIIQQ RKNGLLSQSF SCSSSSTESK TTTTNYLDEN TSKGAADKML DDDQKKPEMD  240
LNEFLQQMGI LKDNSQAEVS QVAECDSTPL WKEQEETGSE ASTMHFDSSN LESYGDLEYD  300
LGFPSIWNFC GILDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1785141360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589356.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894691e-146AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589356.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX51e-120DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A0D3CUD30.0A0A0D3CUD3_BRAOL; Uncharacterized protein
STRINGBo6g073020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-121ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]