PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013589101.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 326aa MW: 37764.5 Da PI: 9.9066 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.3 | 9.5e-26 | 197 | 245 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ledlskyF pi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl XP_013589101.1 197 GLCLEDLSKYFGVPIVEASRKLNVGLTVLKKKCREFGIPRWPHRKIKSL 245 5779*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.803 | 180 | 265 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-21 | 198 | 245 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MAHSLTSLAI FQGVNHKEMI RSLHVYGSVE IEREFLFERK GRYVEKKAKP LFCSEGLQRA 60 EISLGLVFGT WRCIFVFRSN HSLPQFPTLL CPSRNPKLVD IPNLANVLKF ISELKPKKPC 120 FDEHKLLDLV FKEDRVGDGE VDQAKPERFA LKQDLNCLPD SETESEKSED DQTEQSESDV 180 RTEIFKKRRT PSQHVAGLCL EDLSKYFGVP IVEASRKLNV GLTVLKKKCR EFGIPRWPHR 240 KIKSLDSLIH DLQEEAEKQQ EKNKAAAMVV AKKQKKLERE MRNIVERPFM EIQIETKRFR 300 QDNFKKRHRA SRAKKNQESL ATSSST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013589101.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL031135 | 7e-72 | AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project). | |||
GenBank | AL161587 | 7e-72 | AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83. | |||
GenBank | CP002687 | 7e-72 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589101.1 | 0.0 | PREDICTED: protein RKD5 | ||||
Refseq | XP_013665877.1 | 0.0 | protein RKD5 | ||||
Swissprot | O81791 | 1e-165 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | A0A0D3A1Q8 | 0.0 | A0A0D3A1Q8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FQR5 | 0.0 | A0A3P6FQR5_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo1g006340.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12049 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 1e-134 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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