PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588980.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 334aa    MW: 37894.4 Da    PI: 4.6193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18122171255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+++AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  XP_013588980.1 122 KFRGVRRRP-WGKYAAEIRDPEQ---RRRIWLGTFSTAEEAALVYDNAAIRLRG 171
                     89*******.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.5E-29121179IPR001471AP2/ERF domain
PfamPF008471.6E-11122171IPR001471AP2/ERF domain
PROSITE profilePS5103223.011122179IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-20122179IPR016177DNA-binding domain
CDDcd000181.60E-32122180No hitNo description
SMARTSM003808.0E-39122185IPR001471AP2/ERF domain
PRINTSPR003671.7E-9123134IPR001471AP2/ERF domain
PRINTSPR003671.7E-9145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MMMDEYMDYR PVKYTEHKTV IKKYTKKSSV ENKKKKKISP GRDSAKLVRV CVMDHDATDS  60
SSDEEELLFP RRRVKRLINE IRVEPASSDE VSAAANKNGK SLAVEPPLEK VSVSGDDQNE  120
RKFRGVRRRP WGKYAAEIRD PEQRRRIWLG TFSTAEEAAL VYDNAAIRLR GPDALTNFAV  180
PPEPKPEQEP ESKSSISVSS TSESMDYSNH HLLSPTSVLN YGISEPIDEP VKPVKQEFIK  240
PEPITWPFEE GNGNDIDGSF PLDIPFLDNE SLPDISIFEQ SMSHIQSPEN GFFDDLMLFD  300
HNNMGGENYC SDIEEIGSMF NSVDDFFISD FLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21121178159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895660.0AC189566.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588980.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE31e-149CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A0D3A7580.0A0A0D3A758_BRAOL; Uncharacterized protein
STRINGBo1g051080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-131cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]