PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013588834.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 310aa MW: 34777.9 Da PI: 7.2696 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 42 | 1.5e-13 | 237 | 261 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+y d+C+FaHg XP_013588834.1 237 KTELCNKWQQTGACPYADNCQFAHG 261 9***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-18 | 230 | 268 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-10 | 233 | 267 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-8 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.469 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-10 | 237 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-12 | 269 | 302 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-9 | 269 | 304 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-5 | 273 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.972 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEKVTSTVTD LACVTALNSP PPPLSPQSDK SVTKQHQEDF AASFASLYNS IFSPESQFPD 60 SLSLSPSPPY SSSSLPARVD TATEHRLRQA SLILEYDELN ENYEVCLSRL QSLMTELDSL 120 RRENDALRQE NVDLLKLIHI STSSSSSSVS PPHVRNRQQI SDFGSQARRR SDPERNSLPK 180 SISVRSPGYL KMMNQGSHGY GCANRQTSQL GSDSVCVPTK GERDALELEV YRQGMTKTEL 240 CNKWQQTGAC PYADNCQFAH GIDELRPVIR HPRYKTEVCR MIVTGATCPY GHRCHFRHSL 300 TEQERMLLTH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 1e-20 | 237 | 302 | 5 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013588834.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588834.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X2 | ||||
Swissprot | Q9C9N3 | 1e-130 | C3H14_ARATH; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A078IPB9 | 0.0 | A0A078IPB9_BRANA; BnaC06g27780D protein | ||||
STRING | Bra004189.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-129 | C3H family protein |