PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588830.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 314aa    MW: 35234.5 Da    PI: 7.4996
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH421.5e-13241265226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tG C+y d+C+FaHg
  XP_013588830.1 241 KTELCNKWQQTGACPYADNCQFAHG 265
                     9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.1E-18234272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-10237271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469239267IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-8239266IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10241265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-9273308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-12273306IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972277305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEKVTSTVTD LACVTALNSP PPPLSPQSDK SVTKQHQEDF AASFASLYNS IFSPESQFPD  60
SLSLSPSPPY SSSSLPARVD TATEHRLRQA SLILEYDELN ENYEVCLSRL QSLMTELDSL  120
RRENDALRQE NVDLLKLIHI STSSSSSSVS PPHVRNRQQI SDFGSQARRR SDPERNSLPK  180
SISVRSPGYL KMMNQGSHGY GCANRQTSQL GSDSVTQKVC VPTKGERDAL ELEVYRQGMT  240
KTELCNKWQQ TGACPYADNC QFAHGIDELR PVIRHPRYKT EVCRMIVTGA TCPYGHRCHF  300
RHSLTEQERM LLTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-21241306570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588830.10.0PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_013588831.10.0PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_013588832.10.0PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_013588833.10.0PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
SwissprotQ9C9N31e-132C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A078IPB90.0A0A078IPB9_BRANA; BnaC06g27780D protein
STRINGBra004189.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-131C3H family protein