PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 197aa    MW: 21998.4 Da    PI: 4.304
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588750.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-192070155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+y+GVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  XP_013588750.1 20 SKYRGVRKRK-WGKWVSEIRLPRS---RERIWLGSYDTPEKAARAFDAAQFCLRG 70
                    89*****999.**********954...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-122070IPR001471AP2/ERF domain
CDDcd000184.45E-272080No hitNo description
SuperFamilySSF541712.03E-192079IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-262178IPR001471AP2/ERF domain
SMARTSM003802.8E-282184IPR001471AP2/ERF domain
PROSITE profilePS5103222.1942178IPR001471AP2/ERF domain
PRINTSPR003673.6E-102233IPR001471AP2/ERF domain
PRINTSPR003673.6E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVKKAMKEEE EENRNSSMQS KYRGVRKRKW GKWVSEIRLP RSRERIWLGS YDTPEKAARA  60
FDAAQFCLRG GDSAFSFPYN PPSISGGRSL TAPEIREAAA RFANAQDNII SVRGEESGLS  120
EIRPESPSTS VSEVDTSSAT TLDCDLSLFD LLPADFGMFP GFDDFSDGFS GDGITEILTI  180
EDYGEEILDG TFFLWDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1519861280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896050.0AC189605.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH015N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588750.11e-142PREDICTED: ethylene-responsive transcription factor ERF018-like
RefseqXP_013682520.11e-142ethylene-responsive transcription factor ERF018
SwissprotQ9S7L55e-85ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A0D3CWL11e-140A0A0D3CWL1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GAD91e-140A0A3P6GAD9_BRAOL; Uncharacterized protein
STRINGBo6g086740.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.19e-78ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]