PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013588626.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 332aa MW: 36970.4 Da PI: 8.7088

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013588626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170	7.7e-53	36	164	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv +yLk+k+++++l++ +i++vd+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+ XP_013588626.1 36 LPPGFRFHPTDEELVIHYLKRKADSSPLPV-AIIADVDLYKHDPWELPEKALFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVIST 129 79**************************.88***********8888899***********************************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy+g+ pkg k+dW+mheyrl XP_013588626.1 130 gdGNKKVGVKKALVFYTGKPPKGIKSDWIMHEYRL 164 888899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-65	32	196	IPR003441	NAC domain
PROSITE profile	PS51005	61.763	36	195	IPR003441	NAC domain
Pfam	PF02365	7.4E-28	37	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MHPFKIQESL TLTPSRKCQA MESTDSSGGP PPQPNLPPGF RFHPTDEELV IHYLKRKADS 60 SPLPVAIIAD VDLYKHDPWE LPEKALFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT 120 GTDKPVISTG DGNKKVGVKK ALVFYTGKPP KGIKSDWIMH EYRLADNKPS LRCDFGHKKN 180 SLRLDDWVLC RIYKKNNSTS SRHHHHHHLD NDKDDDLYRL PMSVPGQNVS RTNLFSAVFS 240 DNNNPAAIYD GGGGGTGYSM NHDFASSSGL NQKPNIPMPF WDQDPAKRFN GGVGDGSDMV 300 SSVAAPSLMQ QQGGVLGDGL DRTSYQLTGL NW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-73	35	198	14	171	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.14328	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269\|PubMed:16055634}.
Uniprot	TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269\|PubMed:15100403, ECO:0000269\|PubMed:16055634, ECO:0000269\|PubMed:18849494}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013588626.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974757	0.0	KF974757.1 Brassica napus NAC transcription factor 18-1 (NAC18-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588625.1	0.0	PREDICTED: NAC domain-containing protein 18 isoform X1
Swissprot	Q9LD44	1e-123	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A0D3CQJ4	0.0	A0A0D3CQJ4_BRAOL; Uncharacterized protein
STRING	Bo6g030920.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-108	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]