PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013588609.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 317aa MW: 36087.1 Da PI: 8.6282 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.6 | 3.1e-42 | 85 | 160 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC++dls+ k+yh+rh+vCe+hsk++vv+v+g+eqrfCqqCsrfh lsefD++krsCrrrLa+hn+rrrk++ XP_013588609.1 85 CQVHGCNMDLSSSKDYHKRHRVCEAHSKTSVVIVNGIEQRFCQQCSRFHFLSEFDNGKRSCRRRLAGHNKRRRKPS 160 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-34 | 78 | 146 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.958 | 82 | 159 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.06E-39 | 83 | 163 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-32 | 85 | 158 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MDSWSYGTFL LPSDSFPENP RTMAQGLSNE FDKVDDVNGL CAVSSSSNLS SLDFKLRSFM 60 DYGNYDGNTS SRAKKPRASS SSPLCQVHGC NMDLSSSKDY HKRHRVCEAH SKTSVVIVNG 120 IEQRFCQQCS RFHFLSEFDN GKRSCRRRLA GHNKRRRKPS FYFLHGKQQQ QHKLLPQGNK 180 FHGRLVSFKD EPMFPAENMS FYSPEAASGV SSIWDLHEAA PPRYTCAHSL LSAQSQQHLS 240 ETQNQTLNAS IIDYHHMQPL RTDLGNSKTD SSSCNGKRSS TVDLLQLSSH LQRIEQQQRS 300 FTNDDVKHEY NNELYFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-30 | 78 | 158 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 158 | KRSCRRRLAGHNKRRRKP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013588609.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189298 | 0.0 | AC189298.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB028I01, complete sequence. | |||
GenBank | AC189458 | 0.0 | AC189458.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073F16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588609.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_013588610.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Swissprot | Q94JW8 | 1e-111 | SPL6_ARATH; Squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A0D3CZ62 | 0.0 | A0A0D3CZ62_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GUL5 | 0.0 | A0A3P6GUL5_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g108620.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9275 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-88 | SBP family protein |
Publications ? help Back to Top | |||
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