PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588608.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 312aa    MW: 35207.5 Da    PI: 9.8301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.93.1e-1427121286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                     W+++ + +Li+a  ++  +l+rg l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k++ ++    ++s +p+f+
  XP_013588608.1  27 WSEEATFTLIQAWGRRYVDLSRGGLRQKHWQEVANAVndrhfntgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSE---SHVSAWPFFS 118
                     ************************************************997777789********************99997...47789***** PP

        trihelix  84 qle 86 
                     +l+
  XP_013588608.1 119 DLD 121
                     *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-2425123No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKDAVNDSFS PGSSRPSPSM LSREDYWSEE ATFTLIQAWG RRYVDLSRGG LRQKHWQEVA  60
NAVNDRHFNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSESH VSAWPFFSDL  120
DELLRETFPA SSSAAPDDSQ RPSPSLPLSI VPVPVAPRSA ISRRPAPAIM SLGGDNLLGF  180
RGNLNAFAAA AAAAASPAYE DDSDGSRSRS SGGNNRKRER ETEIEEKKGY KEVAEAIERF  240
GKIYEKVEER KRKEMVELEK QRMRFAKELE CHRMQLFTEM QVRLHKLRRS SGPTSSANAA  300
LEYGMMDFPS YF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532441e-117AK353244.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-O01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588608.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A0D3CUM80.0A0A0D3CUM8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GQQ10.0A0A3P6GQQ1_BRAOL; Uncharacterized protein
STRINGBo6g075950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-121sequence-specific DNA binding transcription factors