PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588581.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 240aa    MW: 26379.6 Da    PI: 8.1509
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588581.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-18160194135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  XP_013588581.1 160 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 194
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.3E-832238IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.81E-14153216No hitNo description
SMARTSM004011.2E-15154204IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.754154190IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-13158192IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.01E-13159206No hitNo description
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
PfamPF003206.4E-16160194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDVYGLSSPD LLPIDDLLDF SNGEIFSSSS TIVSSATSSA SSSSENPFNF PSPASTSFHT  60
SPPPLTDFAH DLCVPSDDAA HLEWLSRFVD DSFSDYPANP LTMTVKPEMS FTGKPRSRRS  120
RATAPSTWVP TPEAELCHSV AKRKTTKKLE AAERGGARRC THCASEKTPQ WRTGPLGPKT  180
LCNACGVRFK SGRLVPEYRP ASSPTFVLTQ HSNSHRKVME LRRQKEQLES AVHLLPFQPQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588581.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531960.0AK353196.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-22-H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588581.11e-177PREDICTED: GATA transcription factor 4-like
SwissprotO497431e-117GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A0D3CUZ71e-175A0A0D3CUZ7_BRAOL; GATA transcription factor
STRINGBo6g077140.11e-176(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-98GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]