PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013588550.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TALE

Protein Properties

Length: 272aa MW: 31448.8 Da PI: 10.2196

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013588550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.9	6e-07	236	269	19	50
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqN 50 Fe ++yps ++ LA++ gL+ +qV++WF N XP_013588550.1 236 FEHflHPYPSDVDKHILARQSGLSRSQVSNWFIN 269 664459**************************99 PP
2	BELL	98.4	5.8e-32	94	165	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+kakLl +lee++++Y +y+e+++ ++ Fea +glg+a++Yt+lA++a+SrhFrcLkd +++qi XP_013588550.1 94 EFMELQKRKAKLLAMLEELKRKYGHYREKMRLAVAGFEATVGLGAAEMYTALASRAMSRHFRCLKDGLVGQI 165 679*******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07526	5.5E-39	22	161	IPR006563	POX domain
SMART	SM00574	8.4E-58	26	163	IPR006563	POX domain
SuperFamily	SSF46689	2.52E-12	210	270	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.301	214	272	IPR001356	Homeobox domain
CDD	cd00086	1.11E-6	217	270	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-20	220	270	IPR009057	Homeodomain-like
Pfam	PF05920	7.5E-15	234	270	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MMMMNSHHQN NNSNHHQFQI GISMYLGAAQ ELLTEFCSLG VKESDDQVMM MKHKRKQKGK 60 QQEDWDRSNN NNDQHDQSAT TSLKKHVPPL HSLEFMELQK RKAKLLAMLE ELKRKYGHYR 120 EKMRLAVAGF EATVGLGAAE MYTALASRAM SRHFRCLKDG LVGQIQATSQ ALGERDEDNR 180 WVSNAARGET PRLRLLDQAL RQQKSYRQIS LMEAHPWRPQ RGLPERAVTT LRAWLFEHFL 240 HPYPSDVDKH ILARQSGLSR SQVSNWFINA NS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269\|PubMed:8521490}.
Uniprot	TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269\|PubMed:8521490}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013588550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352866	0.0	AK352866.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-O06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588550.1	0.0	PREDICTED: homeobox protein BEL1 homolog isoform X2
Swissprot	Q38897	1e-146	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A3P6FTS4	0.0	A0A3P6FTS4_BRAOL; Uncharacterized protein
STRING	Bra025497.1-P	0.0	(Brassica rapa)
STRING	Bo6g065180.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-124	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]