PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013588546.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 371aa MW: 42245.5 Da PI: 6.8032

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013588546.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	4e-10	88	131	4	47
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +k rr+++NReAAr+sR+RKka++++Lee +L++ ++L k XP_013588546.1 88 DKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQELEK 131 7999**************************98888888776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.8E-9	80	164	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.1E-8	80	132	No hit	No description
PROSITE profile	PS50217	9.404	87	131	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.2E-7	88	131	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-7	89	131	No hit	No description
PROSITE pattern	PS00036	0	92	107	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.7E-29	173	247	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MMSSSSPTQL ASLRDMGIYE PFQQMVSWRN VFKSDINDHS PYTASSSVIQ VDHNIIKASY 60 PSSSHNQIEA EPSSNDHQEE DDDGRNHDKM KRRLAQNREA ARKSRLRKKA YVQQLEESRL 120 KLSQLEQELE KAKQQGVYSS GSSYVGSSGS INTRIAAFEL EYSHWLEEQS RRVSEIRTAL 180 QAHISDIELK MLVESCLNHY ANLFRMKSDA AKADVFYLIS GMWRTSTERF FQWIGGFRPS 240 GLLNVVMPYL QPLTDQQILE VRNLQQSSQQ AEDALSQGID KLQQGLAENI VIDVVMESND 300 YPSHMGAAVE NLQVLEGFVN QADHLRQQTL QQMAKILTTR QAARGLLCLG EYLHRLRALS 360 SLWAARPREH A

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MMSSSSPTQL ASLRDMGIYE PFQQMVSWRN VFKSDINDHS PYTASSSVIQ VDHNIIKASY  60
PSSSHNQIEA EPSSNDHQEE DDDGRNHDKM KRRLAQNREA ARKSRLRKKA YVQQLEESRL  120
KLSQLEQELE KAKQQGVYSS GSSYVGSSGS INTRIAAFEL EYSHWLEEQS RRVSEIRTAL  180
QAHISDIELK MLVESCLNHY ANLFRMKSDA AKADVFYLIS GMWRTSTERF FQWIGGFRPS  240
GLLNVVMPYL QPLTDQQILE VRNLQQSSQQ AEDALSQGID KLQQGLAENI VIDVVMESND  300
YPSHMGAAVE NLQVLEGFVN QADHLRQQTL QQMAKILTTR QAARGLLCLG EYLHRLRALS  360
SLWAARPREH A

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013588546.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353384	0.0	AK353384.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-N08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588546.1	0.0	PREDICTED: transcription factor TGA7-like isoform X2
Swissprot	Q93ZE2	0.0	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A3N6THZ5	0.0	A0A3N6THZ5_BRACR; Uncharacterized protein
STRING	Bo6g081910.1	0.0	(Brassica oleracea)
STRING	XP_010416756.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]