PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588439.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 577aa    MW: 63458.6 Da    PI: 6.0205
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.6e-09482530348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v+++G g W+ I +        Rt+ ++k++w+++l
   XP_013588439.1 482 AWTLSEVTQLVEGVAKYGAGKWSEIKNLSFsshSYRTPVDLKDKWRNLL 530
                      7*************************999999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.728475534IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-12477530IPR009057Homeodomain-like
SuperFamilySSF466898.22E-16477549IPR009057Homeodomain-like
SMARTSM007171.8E-9479532IPR001005SANT/Myb domain
CDDcd116605.97E-20481530No hitNo description
PfamPF002495.1E-7482530IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MGTVGGNVKD CREMFEGSAA QTRITPFSST NQIKNPVAYK LVRVAGDGRL VPATDEEIFK  60
VNETDMHTAS DACQSVGSLS AQGLPSQLPQ LEETSQGLLQ SGCVEPYTEQ YNEQMLQKVE  120
QDERLAMVHS PHMLSAPDAN SQCCNETSMF NEDHVHHEPS LQQPIPFSSD VQNGCNVDQS  180
NTVEPCSNAA ASPKETAAPP ADAQRPDFSL VRGEICLNNL PIKALQETFK ATFGRETTVK  240
DKTWLKRRIT TGLTNSCNVP TTNLTIKDKK LVGNQDKAND APPSSTDNSN GHSNASGHSL  300
TEDFSSEERA AKRVRKPTRR YIEELSENDE KQPVVTSKDQ KLSEKSDVRS ISVSLGTRVT  360
VTRVVSLAGS EIEVPYVSLV RRSRPRENIM ALMECHSSCL EAKASSGESN MLYSEVLKSA  420
SGPDQKESAT SSSNNEEDVL TEVDQDMETE NIDSSGNSSD DNNNIGLPTM QGGGLRRKHH  480
RAWTLSEVTQ LVEGVAKYGA GKWSEIKNLS FSSHSYRTPV DLKDKWRNLL LRTNFAQSPS  540
NIMGSLKKHG SMHIPMQLLL QVRELAEKQA LVPRNHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588439.10.0PREDICTED: uncharacterized protein LOC106296758 isoform X2
TrEMBLA0A0D3CX260.0A0A0D3CX26_BRAOL; Uncharacterized protein
STRINGBo6g091360.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.10.0TRF-like 6