PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588438.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 583aa    MW: 64113.3 Da    PI: 5.8991
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-09488536348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v+++G g W+ I +        Rt+ ++k++w+++l
   XP_013588438.1 488 AWTLSEVTQLVEGVAKYGAGKWSEIKNLSFsshSYRTPVDLKDKWRNLL 536
                      7*************************999999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.728481540IPR017930Myb domain
SuperFamilySSF466898.97E-16483555IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-12483536IPR009057Homeodomain-like
SMARTSM007171.8E-9485538IPR001005SANT/Myb domain
CDDcd116606.13E-20487536No hitNo description
PfamPF002495.2E-7488536IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MGTVGGNVKD CREMFEGSAA QTRITPFSST NQIKNPVAYK LVRVAGDGRL VPATDEEIFK  60
VNETDMHTAS DACQSVGSLS AQGLPSQLPQ LEETSQGLLQ SGCVEPYTEQ VNSQPEYNEQ  120
MLQKVEQDER LAMVHSPHML SAPDANSQCC NETSMFNEDH VHHEPSLQQP IPFSSDVQNG  180
CNVDQSNTVE PCSNAAASPK ETAAPPADAQ RPDFSLVRGE ICLNNLPIKA LQETFKATFG  240
RETTVKDKTW LKRRITTGLT NSCNVPTTNL TIKDKKLVGN QDKANDAPPS STDNSNGHSN  300
ASGHSLTEDF SSEERAAKRV RKPTRRYIEE LSENDEKQPV VTSKDQKLSE KSDVRSISVS  360
LGTRVTVTRV VSLAGSEIEV PYVSLVRRSR PRENIMALME CHSSCLEAKA SSGESNMLYS  420
EVLKSASGPD QKESATSSSN NEEDVLTEVD QDMETENIDS SGNSSDDNNN IGLPTMQGGG  480
LRRKHHRAWT LSEVTQLVEG VAKYGAGKWS EIKNLSFSSH SYRTPVDLKD KWRNLLLRTN  540
FAQSPSNIMG SLKKHGSMHI PMQLLLQVRE LAEKQALVPR NHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588438.10.0PREDICTED: uncharacterized protein LOC106296758 isoform X1
TrEMBLA0A0D3CX260.0A0A0D3CX26_BRAOL; Uncharacterized protein
STRINGBo6g091360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6