PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588413.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 413aa    MW: 46160 Da    PI: 8.7207
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-066890123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F r  nL+ H r+H
  XP_013588413.1 68 YVCEICNQGFQRDQNLQMHRRRH 90
                    9*********************9 PP
2zf-C2H213.80.00018147168223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C+ C+k +  +s++k H++t+
  XP_013588413.1 147 ICERCSKGYAVQSDYKAHLKTC 168
                     7*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.06E-56591No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976890IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355160110140IPR015880Zinc finger, C2H2-like
SMARTSM00355160146166IPR015880Zinc finger, C2H2-like
SMARTSM00355230173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MIDYERSKNT KNINHHRNPP SSSSSDLLPD GNGAAVTQKR KRRPAGTPDP EAEVVSLSPR  60
TLLESDRYVC EICNQGFQRD QNLQMHRRRH KVPWKLLKRE TTEEVKKRVY VCPEPTCLHH  120
NPCHALGDLV GIKKHFRRKH SNHKQWICER CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV  180
FSRVESFIEH QDHCTMRRSQ PSGHRLQQQQ QHTANATQTA SVAKNVDLSV GPVLPGHPLL  240
RQAPPSDQHT SDLLYPFVGS CATTGSSIEL QLLPSRASAD ETSLSLSIGM EPTTSSYEKG  300
ETSLLLGQRE EAKRQIEIAE LEFAEAKRIR QHAKAELHKA QLYREEACRR ISATMMQITC  360
HDCKKHFQAV AASAPPPPIL PQPPCTDEST SLAVSYVSSA TTEGEKASDR ASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-18144194555Zinc finger protein JACKDAW
5b3h_F8e-18144194555Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269|PubMed:24039602}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588413.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894890.0AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588413.10.0PREDICTED: protein indeterminate-domain 14-like
RefseqXP_013698984.10.0protein indeterminate-domain 14-like
SwissprotQ9C9X70.0IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A0D3CYV50.0A0A0D3CYV5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GCF50.0A0A3P6GCF5_BRAOL; Uncharacterized protein
STRINGBo6g106560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.10.0indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]