PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013588354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 31437.3 Da PI: 9.8673 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.8 | 4.4e-09 | 186 | 233 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq XP_013588354.1 186 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 233 8*************************9....889****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.28E-15 | 180 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.90E-8 | 180 | 237 | No hit | No description |
PROSITE profile | PS50888 | 14.684 | 182 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-15 | 182 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-6 | 186 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-8 | 188 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MDLTGEFEAR SYGGGATREA TRLESLHLGD EFRQLALPPE NAGGFTALLE LPPTQAVNLL 60 RFTDSPSSSS QAAAVTGIAP PPLHSYGTLT FPSNSVLMER AARFSTEHHQ NGNVSGTSSV 120 PSNSSVKTEP AETDSSQAVN NRSGKRKDSD KKAKSSTKKK RNKSSEENEK LPYVHVRARR 180 GQATDSHSLA ERARREKINA RMKLLQELVP GCDKIQGTAL VLDEIINHVQ SLQRQVEMLS 240 MRLASVNPRI DFNLDTILAS ELLGYLLIQT LNSDHFRAWH RKFSF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 160 | KRKDSDKKAKSSTKKKR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013588354.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488593 | 1e-133 | AF488593.1 Arabidopsis thaliana clone bHLH060 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AY139773 | 1e-133 | AY139773.1 Arabidopsis thaliana AT3g57800/T10K17_10 mRNA, complete cds. | |||
GenBank | BT003037 | 1e-133 | BT003037.1 Arabidopsis thaliana AT3g57800/T10K17_10 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588354.1 | 0.0 | PREDICTED: transcription factor bHLH60-like isoform X2 | ||||
Swissprot | Q3EAI1 | 1e-121 | BH060_ARATH; Transcription factor bHLH60 | ||||
TrEMBL | A0A0D3CUF0 | 0.0 | A0A0D3CUF0_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g073190.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 1e-110 | bHLH family protein |
Publications ? help Back to Top | |||
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