PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588300.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 314aa    MW: 35187.7 Da    PI: 6.6554
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31.1e-10189232548
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                     kr +r   NR +A+rsR RK+++i eLe+ v +L++e + L  +
  XP_013588300.1 189 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPR 232
                     899********************************998777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-13185249IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.588187239IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.33E-11189243No hitNo description
PfamPF001702.8E-9189233IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-13189240No hitNo description
CDDcd147035.34E-24190240No hitNo description
PROSITE patternPS000360192207IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAQLPPKIPT MTTTTPHWPD FSSQKLPSIA ATAAATAGQQ NPSWMDEFLD FSTTRRGTHR  60
RSISDSIAFL ETPSSGVGSH HFDRFDDEQF MSMFNDDVHQ NHNNQHNNNV GPTRSSSNTS  120
TPSSDDDNKE PLSADHNRMD TTPIPSNVAG NDNNETDEVQ SQCKTEPQDG PSLNQDSGGS  180
SGNRIHDPKR VKRILANRQS AQRSRVRKLQ YISELERSVT SLQTEVSVLS PRVAFLDHQR  240
LLLNVDNSAI KQRIAALAQD KIFKDAHQEA LKREIERLRQ VYHQQSLKKM ENNVSDQSPA  300
DIKPSVEKEQ LLNA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894450.0AC189445.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070L01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588300.10.0PREDICTED: basic leucine zipper 61-like isoform X1
SwissprotQ9M2K41e-178BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A0D3CUI30.0A0A0D3CUI3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G8J70.0A0A3P6G8J7_BRAOL; Uncharacterized protein
STRINGBo6g074510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-147bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]