PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588180.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 381aa    MW: 43190.5 Da    PI: 4.6312
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.73.8e-33201122102
                     HHHHHHHHHCTGGGTTTSEESSSS.SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkeliswseng.nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Fl+k ye+++d++++++isws+ng nsfv++d++ f+ ++LpkyFkhsn++SF+RQLn+YgF+kv+ ++          eF++++F +g+kell+
  XP_013588180.1  20 FLRKCYEMVDDSSTDSIISWSTNGdNSFVISDTTVFSAQLLPKYFKHSNLSSFIRQLNIYGFRKVDADR---------CEFANDWFVRGQKELLK 105
                     9********************77769*****************************************99.........67*************** PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     ++ r+k+
  XP_013588180.1 106 NVIRRKN 112
                     *999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.8E-3412105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-3115110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-5316110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-192043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-2820110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVKSSSDRVD SSSSSSVAPF LRKCYEMVDD SSTDSIISWS TNGDNSFVIS DTTVFSAQLL  60
PKYFKHSNLS SFIRQLNIYG FRKVDADRCE FANDWFVRGQ KELLKNVIRR KNVQSTSEHQ  120
SKTTTTDACS QGKKSGESEL WKEVDILKGD KKALAQELVK VRQYQESTDT KMLHLEDRVQ  180
GMEESQQEML SFLVMVMQNP SLLVQLLQPK ENNWRKAEGG GGGAKILEEV TDEGETNSKG  240
LPLVTYQKTP SEGVAKSSSN EINDFLRNAD MLKFCLDENR VPLIIPDLYD DGAWEKLLLL  300
SPSKKKKNKV QEKNVNDDVT LQEEDEDGGR MELDKSLALE LIEEEMEKAD DFDFDIGQLT  360
PERSKNLEIL TQHMRLLASD Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-251111020129Heat shock factor protein 1
5d5v_B4e-251111020129Heat shock factor protein 1
5d5v_D4e-251111020129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324490.0AC232449.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588180.10.0PREDICTED: heat stress transcription factor A-8
RefseqXP_013649284.10.0heat stress transcription factor A-8-like
RefseqXP_013698500.10.0heat stress transcription factor A-8-like
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A0D3CYU40.0A0A0D3CYU4_BRAOL; Uncharacterized protein
TrEMBLA0A3N6Q4Y30.0A0A3N6Q4Y3_BRACR; Uncharacterized protein
TrEMBLA0A3P6FZ890.0A0A3P6FZ89_BRAOL; Uncharacterized protein
STRINGBo6g106450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-173heat shock transcription factor A8