PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013587958.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 543aa MW: 59727.8 Da PI: 5.1049 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.3e-23 | 119 | 220 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+ltpsd+++ g +++p+ +a++ ++ + +l ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+ ++s XP_013587958.1 119 FAKILTPSDANNGGGFSVPRYCADSVfppldfhADPPVQ--KLFITDIHGVVWDFRHIYRGTPRRHLLTTGWSKFVNGKKLIAGDSVVFM--RKS 209 89*********************999*****97555555..7************************************************..447 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 e++++v+r+ XP_013587958.1 210 VDEMFIGVRRA 220 88899***997 PP | |||||||
2 | Auxin_resp | 68.5 | 2.1e-23 | 253 | 326 | 1 | 74 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrW 74 a+++a ++ +FevvY+P a++s+Fvv++e+ve ++ +s+G+R+kma+etedss+ ++ +G+v++ + ++ W XP_013587958.1 253 AINKAVQGYPFEVVYYPTAGWSDFVVRAEDVEVSMAGYWSPGTRVKMAMETEDSSRVTWfQGVVSSRFQ-ETGLW 326 57889999***************************************************8999987655.44444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-33 | 110 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-28 | 112 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.647 | 119 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-20 | 119 | 220 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.50E-20 | 119 | 215 | No hit | No description |
SMART | SM01019 | 4.2E-20 | 119 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.0E-18 | 253 | 326 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MSPPPPATAD FLREVDPQIW RACAGASVQI PSLYSRVYYF PQGHVEHSCP SSLISSLSTA 60 PVPCVVSAVE LLPDPITDEV FAHLALQPIS PEHFSPSNFS GFGSDDDENN NSNSKVVTFA 120 KILTPSDANN GGGFSVPRYC ADSVFPPLDF HADPPVQKLF ITDIHGVVWD FRHIYRGTPR 180 RHLLTTGWSK FVNGKKLIAG DSVVFMRKSV DEMFIGVRRA PNSNHGDEYY GGGKKGFRRI 240 GMGKLTAEAV SEAINKAVQG YPFEVVYYPT AGWSDFVVRA EDVEVSMAGY WSPGTRVKMA 300 METEDSSRVT WFQGVVSSRF QETGLWKQLQ ITWDEPEILQ NLKRVNPWQV EVVANSSQLL 360 AIYPPTKRLK HSNSASGFLS GEGGEMLYSG RGQQAVDPSP YLFSYTTFPA GMQGARHYEF 420 GSFNSTGFIG ENTPQLCTNN FFNPLPGLRK ISTEMMNYGS PLSDDLSPNS NTTNLSSGNE 480 QVGNRGHAVR VNSIQLFGQI INVQELTESG LAEGLYEEDG SKESSDNEVV NETQLSLTYA 540 QGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 6e-62 | 15 | 358 | 51 | 395 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013587958.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979479 | 0.0 | JN979479.1 Brassica rapa subsp. pekinensis auxin response factor 17-1 (ARF17-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587957.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Refseq | XP_013587958.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Refseq | XP_013664487.1 | 0.0 | auxin response factor 17-like | ||||
Refseq | XP_022566775.1 | 0.0 | auxin response factor 17-like | ||||
Swissprot | Q84WU6 | 0.0 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A0D3CW32 | 0.0 | A0A0D3CW32_BRAOL; Auxin response factor | ||||
STRING | Bo6g081980.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 0.0 | auxin response factor 17 |