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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_013587904.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
BBR-BPC |
| Protein Properties |
Length: 339aa MW: 37929 Da PI: 9.5068 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013587904.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 388.5 | 1e-118 | 1 | 339 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88
mdd g+r+ r+k+ + + ++ +s+ +q+ms+iaerda+i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd++l al+++e
XP_013587904.1 1 MDDGGHRDngRHKTpQGQwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISERKSAVAERDMAFLQRDTAIAERNNAIMERDSALSALQYRE 90
999999887777762211222222444.....5************************************************************** PP
GAGA_bind 89 nsla.........salpvgvqvlsgtksidslqqlse...pqledsavelreeeklealpieeaaeeakekkkkkk.rqrakkpkekkakkkkkk 170
ns+a ++p+g+q+ +g+k+i++ q++++ ql+d+a++ e+++++ lp++ +e+a +++k+k+ ++r k+pk+++++ ++k+
XP_013587904.1 91 NSMAtpsavsnmaAVCPPGCQMPRGVKHIHHPQMHHQhhmLQLSDHAYD--ESREMDGLPTSPPPETALDSAKPKRgGKRVKDPKATTKTTANKR 183
**999*****99999*******************655568899999999..44445566666677776666655542799*************** PP
GAGA_bind 171 sekskkkvkkesader.......................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241
++k+ +kvkke++d+ sk+++ks+++ +ln+v +De+t+P+PvCsCtG lrqCYkWGnGGWqS+CCtttiS+
XP_013587904.1 184 GPKNPRKVKKENEDDLtkimfvktldygeeetsklvltgSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGDLRQCYKWGNGGWQSSCCTTTISM 278
**********99883358*******************************88******************************************** PP
GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
XP_013587904.1 279 YPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 339
***********************************88***********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MDDGGHRDNG RHKTPQGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE RKSAVAERDM 60
AFLQRDTAIA ERNNAIMERD SALSALQYRE NSMATPSAVS NMAAVCPPGC QMPRGVKHIH 120
HPQMHHQHHM LQLSDHAYDE SREMDGLPTS PPPETALDSA KPKRGGKRVK DPKATTKTTA 180
NKRGPKNPRK VKKENEDDLT KIMFVKTLDY GEEETSKLVL TGSKSDWKSQ EMVGLNQVVY 240
DETTMPPPVC SCTGDLRQCY KWGNGGWQSS CCTTTISMYP LPALPNKRHA RVGGRKMSGS 300
AFNKLLSRLA AEGHHDLSNP VDLKDHWAKH GTNRYITIK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF529514 | 0.0 | EF529514.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
